G314628


Basic Information

Item Value
gene id G314628
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4800652 ~ 4801103 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372673
tgtacgcttttcttactatattaccttcCCACCAGAGTTTTtcgactgatggtattcttagtccatgTGAACCTAgagaaccagtatcaggatgtatttactgatagagacttcaaatcacttctgtaagtcgctctggataagggcgtctgccaaatgccatgaatgtaaacgtaaatggtgctGAACTGTCGCCACGCGCCAAAATTAGCTGTCGAAGGGAAATGGGTTAAAACTGTGTAGTGTGCACTAGGCGTTGGACCTGATTTATAATTCTGTGTCTTCATATCTGTGAGCATTTGCAGGGATCGTGAGCAGGCGGTCGCACTTTTGTCCGTCAACGTAATGCAAACCTGTCCGCTAGGGGGCAGTGTTACAACACCTCGTACACTGCATTTAAgaataatttaaagaaaaatttgtTTGCCCGAAATGACCGCAACTGAATGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372673 True 452 lncRNA 0.43 1 4800652 4801103

Neighbor

gene id symbol gene type direction distance location
bud23 wbscr22 coding upstream 209696 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 224004 4546135 ~ 4576648 (+)
cux1b cux1,LOC106581515,LOC105006988 coding upstream 266678 4376994 ~ 4533974 (+)
LOC113543315 LOC108280769,LOC108423999 coding upstream 450108 4315743 ~ 4350544 (+)
wdr53 wdr53 coding upstream 492600 4300799 ~ 4308052 (+)
LOC113543019 zadh2 coding downstream 231146 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 258927 5060030 ~ 5070433 (+)
LOC113543113 NA coding downstream 269515 5070618 ~ 5073139 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding downstream 320594 5121697 ~ 5191399 (+)
LOC113543161 arl14 coding downstream 395546 5196649 ~ 5197934 (+)
G314609 NA non-coding upstream 20507 4779938 ~ 4780145 (+)
G314404 NA non-coding upstream 272832 4517601 ~ 4527820 (+)
G314402 NA non-coding upstream 415787 4379637 ~ 4384865 (+)
G314364 NA non-coding upstream 505578 4294865 ~ 4295074 (+)
G314362 LOC108280893 non-coding upstream 506923 4290254 ~ 4293729 (+)
G314636 NA non-coding downstream 45089 4846192 ~ 4846717 (+)
LOC117599956 NA non-coding downstream 83107 4884210 ~ 4893278 (+)
G314675 NA non-coding downstream 176918 4978021 ~ 4978966 (+)
G314785 NA non-coding downstream 321595 5122698 ~ 5123402 (+)
G314800 NA non-coding downstream 419543 5220646 ~ 5221823 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 10817 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 38557 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1311285 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1911264 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 2124804 2675281 ~ 2675848 (+)
LOC113543089 mbp other downstream 100367 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 286736 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 399918 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 418442 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 539906 5341009 ~ 5370897 (+)

Expression


Co-expression Network