LOC113543113


Basic Information

Item Value
gene id LOC113543113
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5070618 ~ 5073139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941161.2
CTGGATCTCTTTCAGATTATAAAAGGTTAGTGCATTTTAAACAGATCACAGATCCAAAGGCAGTACGACCATCATGCACTTCTTCCACAACCTctttgtttttttagCCTTGCTTGCAAGTGTCAGGCTGGATGATGAAGATCCTGCACCACCCCCAGTGAAAGCCAAAGCTACACTGAGTTTGGGAGAGCTATGGTTCTTCTCAGGGGAAGATGTGCAGATGACTTGCAGTGTCCCAGATGACCCTTCAACCGATTGGTCATATCAGTGGTTCCTGGATGGTGTACTCTTGAGTTCCACAAACGTGTACAGTATACAGAAGGCACGAGTCCAGCAAAGTGGAAACTATACCTGTCAAGGACAGAAGCTGCTAAAAGAGTGGCCCTATTCCATGTTGACAATTCCAAGCAACcctcttaaaataaatgttgatgGTGGTTGGGTTCTCCTAAGAATGCCATTTGAGCCATTAATTGTTGAGGAAACTATGACTCTGACCTGCCGTGTCCGTGATGACCCCTTACTGTCAAAGGTGATCTTCTACAAGGGTGAGGTGGAGGTCACgaagcagaaaaacaaaaatctggtGTTTCCCAGCCTCAAGCTTGAGGATAATGGCATGTACTCATGCAGGGCCACATGGGTTAAGAACCAGGAATATCATTCTGCCCAGTCTGTGCCTTCTTCTGTGACTGTATTAGATAAATTGGAGACTCCCAGGTTGGTGTTACTTGGAAGTCGCGGTTTGGTGAGGAGTGGGAACCAAGTGGTCTTCAGATGTATCACCAAAGTAAATGCTAGAGAACAAGGCCTGAGTGTAGAATACCACTACCTCAAAGATGGCAACAGGCTAGGACCTGCTTCTGCCACAGATACATACGTCATCGCACAGGTGAGCAAAGATGATGCCGGAGTCTACACCTGCAAAGTCCGAGTAAGGGCTCTGAATGTGGTGAAGTGGTCTAATGAGGTACGGCTGAAGGTCCTGCCCCCTGTGAACCTGTAGTCCACAGAATAGCCATGTTCCAGACCTGGAATGCATGAAGCAAGACACCTATCATCCAAGTTCTGCACTGTTTTAGAATACTCTTGCATAGTTTACTGTTTTCTGCCTttcttccatccatctgttcacAATTTTGACCCTTAAATGTATCTTTTATACTGGATTGcgattatgcaaattatatttTGAATCTGAGatactttatatatttcatCATCTGTAATTTTACAAGAACAGAGATAGAGCCTTAAATATCAGTGTTCCTATTTGATTTTAATACAcatgcatgattggctgatttaaATCTGATAAAGCAATACTTTTTTCTTTGGAatatatgtgtaataaatgattttttttttttttacaaactattAATAAACACATGAAACTGC

Function

GO: NA

KEGG:

id description
K06498 FCGR1A, CD64; high affinity immunoglobulin gamma Fc receptor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941161.2 True 1401 mRNA 0.42 6 5070618 5073139

Neighbor

gene id symbol gene type direction distance location
rabgef1l LOC108280803 coding upstream 185 5060030 ~ 5070433 (+)
LOC113543019 zadh2 coding upstream 34173 5032249 ~ 5036445 (+)
bud23 wbscr22 coding upstream 479662 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 493970 4546135 ~ 4576648 (+)
cux1b cux1,LOC106581515,LOC105006988 coding upstream 536644 4376994 ~ 4533974 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding downstream 48558 5121697 ~ 5191399 (+)
LOC113543161 arl14 coding downstream 123510 5196649 ~ 5197934 (+)
trim59 trim59 coding downstream 149394 5222533 ~ 5226707 (+)
ift80 ift80 coding downstream 176329 5249468 ~ 5322606 (+)
lxn LOC108280775 coding downstream 643167 5716306 ~ 5723799 (+)
G314675 NA non-coding upstream 91652 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 177340 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 223901 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 269515 4800652 ~ 4801103 (+)
G314609 NA non-coding upstream 290473 4779938 ~ 4780145 (+)
G314785 NA non-coding downstream 49559 5122698 ~ 5123402 (+)
G314800 NA non-coding downstream 147507 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 250185 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 301291 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 301604 5374743 ~ 5374957 (+)
LOC113543089 mbp other upstream 112497 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 280783 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 308523 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1581251 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 2181230 2889315 ~ 2889388 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 14700 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 127882 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 146406 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 267870 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 821365 5894504 ~ 5901566 (+)

Expression


Co-expression Network