ppm1lb (ppm1l,LOC107722109,LOC107681725)


Basic Information

Item Value
gene id ppm1lb
gene name ppm1l,LOC107722109,LOC107681725
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5121697 ~ 5191399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941223.2
ttttttttttatgacagcGCGTCACACTCGTGTGTATTTTGGGgaagtggtggtgtgtgtgtatgagtgtggatgtgtgtgtgtggagaaggaGCTTTCAGCTCGCCTGCTGTCTGATTCTGTAAGACAGCTGATGGGGAAGGAGAGAGCACCGCTTCACTGCGGGTTTCTATGTAAATGAAAGCGCTGGACTGCGGCTGCACACCGGCGGAACCGGCGCCAATGCGCGCGCGACGCGCTCCCTTTTCcaggcaacaacaacaacaacaacaacaacaagagcTACAAAGTGTAAAACATTTCTGCTTGTTTGCACGTCAGGGATGGACTGAGACGCGCTGAAGGTGGACGTGATCAGCTCGAGCAGGTCAGTGAGCTATTTCCGGCGTGTGCGCGTTTGGATAAATGATAGGAGATACGATGACCCTGCTGTCTCTTCTGGGTCGGATCATGCGCTATTTCCTACTGCGACCGGAGACGTTGTTTCTGCTGTGCCTGAGCCTGGCTTTATGGAGCTATTTCTTCCACACCGATGAGGTGAAGACGATTGTGAAGTCGAGCCGCGACGCCGTGAAAATGGTCAAGGGCAAAGTGGCCGAGATCATGCAGCACGACCGGTTCGGCCTGGACTTGTCCGAGGCGGAGTTCTCCAAGAGCTGGGAGCTGAAGAGCCCCGGAGCCGCCGTGTACGCCATCCAGGGACGCCGAGATCACATGGAGGACCGCTTCGCCGTGCTCACCGACCCGGTCAACCGGAGCCACCCGTCTATCTTCGGGATTTTCGATGGACATGGTGGAGAGgCAGCAGCAGAATACGTGAAAACTCGCCTGCCCGAGGTCCTGAAGCAGCACCTACAGAATtatgagaaagagaaggagaacagTCTTTTGTCTTACCAATCCATCCTGGAGCAGCAGATCCTCAATGTGGACAAGGAGATGCTGGAGAAGCTCTCTGCCACCTATGATGAAGCAGGAACAACATGCCTGGTGGCGATGTTGTCTGAAAAGGAACTGACAGTAGGTAACGTGGGCGATTCCAGAGGAGTTTTGTGTGATAAAGACGGTAATGCCATCCCCCTGTCATATGACCACAAGCCCTACCAACTCAAAGAGCGCAAGAGGATCAAGAAAGCAGGTGGCTTCATTAGCTTCAACGGCTCATGGCGCGTGCAGGGAATCCTGGCCATGTCTCGATCTCTGGGCGACTACCCACTTAAGAAGCTAAACGTGGTGATCCCCGAACCTGACgtggtgacctttgacctggaCAAACTGCAGCCCGAGTTCATGATCCTGGCATCGGATGGCCTGTGGGACGCCTTCAGTAACGAGGAGGCCGTGCGTTTCATCCGCGAGCGCCTCGATGAGCCACATTTCGGCGCCAAGAGCATCGTGCTGCAGGCGTTTTATCGTGGCTGCCCAGACAACATCACAGTCATGGtggttaaatttaaaaagagtGGCACCAAAGTGGCTGAGCAGTGAACCACGGCTAATATGAACTAATAATATATTCAGCATTATCAGTATGAATACCAATCTATTTGAATATATTATTGGCTCATATTAATATATGTGTAAGGATGCAAATGGAAAACCGTTTCATGACTATTTTTGGAGCAAGAACTGTTTGTTACAATAATGTCAAATTAAAGTAAACTCACGTCATCCCATTATGTCATTTTCCTGAATCCTTTGTTTCAAATAGCACATGATGGAGAGAAAATGTATGAGAAGCCACAGCTTGTGTAATGGAGTAACAGAGGTCACTTTCCTTTTCAAATTTTAgcttaatattcatttattcatgttaaaGAGTATTGTTCAGTAATTACTATGGATGGTAAAATGGGTACATAGATATGAAAGTGAAGAATGTAAGTCAGGGGTGTGGGATATTAAGtggatttattataaaaaaaatcgcCAAGATGATTATGGTGCTTCAGGaattcaaatgaaataaaatgctttcCTTTGTAGATGAAAACTAAAGCACATGTAGCCTCCAGTAGAATTCGTTCAATGTCAGTAATTTCTTAAGGCAAGACACCACAGGTCACATCAGccatttttcagatttctgtatAAATTGCGTCCTATAACATATCTTCTCAtaaactgtaatgtgtgtgtgtgtgtgtgtgtgtgtaat

Function

symbol description
ppm1l Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within MAPK cascade and transmembrane receptor protein serine/threonine kinase signaling pathway. Located in extracellular exosome.

NR:

description
PREDICTED: protein phosphatase 1L isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941223.2 True 2158 mRNA 0.47 4 5121697 5191399

Neighbor

gene id symbol gene type direction distance location
LOC113543113 NA coding upstream 48558 5070618 ~ 5073139 (+)
rabgef1l LOC108280803 coding upstream 51264 5060030 ~ 5070433 (+)
LOC113543019 zadh2 coding upstream 85252 5032249 ~ 5036445 (+)
bud23 wbscr22 coding upstream 530741 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 545049 4546135 ~ 4576648 (+)
LOC113543161 arl14 coding downstream 5250 5196649 ~ 5197934 (+)
trim59 trim59 coding downstream 31134 5222533 ~ 5226707 (+)
ift80 ift80 coding downstream 58069 5249468 ~ 5322606 (+)
lxn LOC108280775 coding downstream 524907 5716306 ~ 5723799 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding downstream 590894 5782293 ~ 5783234 (+)
G314675 NA non-coding upstream 142731 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 228419 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 274980 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 320594 4800652 ~ 4801103 (+)
G314609 NA non-coding upstream 341552 4779938 ~ 4780145 (+)
G314800 NA non-coding downstream 29247 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 131925 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 183031 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 183344 5374743 ~ 5374957 (+)
G314826 NA non-coding downstream 203913 5395312 ~ 5396474 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 30424 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 163576 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 331862 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 359602 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1632330 3423567 ~ 3489367 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 9622 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 28146 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 149610 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 703105 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 1035318 6226717 ~ 6227240 (+)

Expression


Co-expression Network