G314404


Basic Information

Item Value
gene id G314404
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4517601 ~ 4527820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372416
ctaaaggacaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaagaggggGCGGGGGATTTGGGGCCACACCCACACCCAGCCTTAAAGTGCCAGAGGCCTCAAAGCCCCTCTCACGTATATCGTATATTACTTACggggaaatgtttttattttgtccacTAGCATTTGATAAGCACTCACTACGAACGGGTTTAAGGCGTGCacacagtccaaaaaaaaataatgattaaaaaaaaataacgacGCGCTTACTTTCTATGTATAGTATCTGTAATAAGATGTACAAACTTTATCAGATCATGATATGGAGAAGACCTTCGAGAGAAACACTTTGAAGGTCGGACGAATTTTTGTGGGATGGATACGGATCATGCCAAATACTAAGATTATGTCAGACGTTCCCTGAGACTCTGTTGAGGTCTGTGTGTCTCAACGTGGTTTTGTATGGTAGGATGTGTAtatacttttttgtgttttttggcattttactttctctctcaccctaTTGATCTGTCTCAGCTCTTAACTTCACTTGTCATCACCTAATTGTAACTTCACATTGAAGTTTTGAGACAGTCAGGCGTCTGAGTAAGAGCACGCTGACGTGTCTCGGCGTTCTTTCTCTCAAGCTCTAATTAGCGCTTATCTTGACTAAACACCCATATTTGAGGTTTGTATCCAGGAGAGTGTGACCACAGGCGAGAATTGTTAGTCTGGCTCCAGTTTGGGTGCtaacacacacgtgcacacacacacacaaatacacacaaacacatgcccCAAACTCATGAGTCAGTACTAGGCTTTAggtcatgtgtgtgtggagcgtTCAAGATGCTCACTGACTTTCAgttttgctctgtttttatACAAGTGATTGccgtttgtgtgttttgttcctcatACTTTCCACTAGATATGGTGCCATAGACTCGAATAGACTGATTCTGCAAAGCAATCCCATCATGCCTCTGAACGTAGACCCGCTGAATCACGATCCTTGACTTTATTGTGACACTTAAAAAGAATAAGCGATCTTCCCGAACTCCacctgtgtgtttcagtgtgacCTCGTCACGTCAGTCTGCATGAGCATTTGAAACTTGTACTGCCTTTATCCTCTCTCCGCTCACCTCCGAACCTCGCCTCGTGTTAGGTTTGggatttaatttcacattctttttcctctgatctctgttggggttttttttccgtATTTTTTTAGTGTGTCATGTAGTCTGTTCTCAGCACTGTAAGACAGTCCCTTATACAATATGGAGAAGCAATATCACTGTAAGAAATCTTcacaatgtattattattgttattatgattattattattcactagCACCCTAGGTGTGATAATTGAAGTAAATATCTTTTATACAAACACAGATGGCTTGTGGTCCGTCCCTTTATTTATTCCCTTCTCCGACGCACACATTTTAAGTACAAGGACACACATTTTGGTGGCTAGTAACATGGAAGTGATGTCtacatcataaaatacaaatttatgATTGACATATATCGCAATATTGCAATGCTATGGATCTGATTATTTGTTTCAGgcatctgtttacatttttctgggccagaaataACGCTGCGTTTGACTTCTTCTACTTCGAGCTGcggaattacatcattttcgaTCTCCAtgtgtttgagctacaaagtgtgaaaaaaacaaaaactttgtttactgctgatgctgtgagcagccatgttgatttgatgtcactgaTGTCACTGAAttcggggttgaggagactaTCCTGCTTTGCTGAGCAGGAATTctgagttttatttctttttttcctagttATAGTGAAATGCAGTGTAAGCTCCACCATTAGTCAGAATGCACCTCTTTTATAACTCGCATTTTATAATATTGGGTTATATAAACAACTGGCTCATTTTAAATGCTCTTAAATATACAGTTGGTAGTTTTGCACTacaaaaaagtgcaaacaaaATGTTCATGGTCCATTTCAGGACAGATTTATGTGATGAacatccaactattcaaatattagacgCCAGATTTAAAcgtgtacagtaatattctgtgtatttgagctttttattcctgaagaGTCATTAGATTcactttaacattatttataggcctaagtttggattaaatccaaATGTTGAGTCAATCTCAGTAATAAGTATAACTTACAGTATAATGGTGGCTGTGgtttccatcactgtaacaaaattaaaaggTCATGGATCCTCTGGCTACACTTCAAAGACCGCAGTACtggttttattttctgctttaacTGCTTTACCCTCCAAgtgcatttaataaaacacttctttcGAGGCTTATTAGAATCTGAGAGCAACCTCTTGTTTCTCCTCATGAAACagcttgttttgtgtgtggTATTAAATAGTCATTAAACTGTACTAATAAAACAAGAAAGTCGTAAAATGAAGTTCATAATGTCGTCTCCTCGGGTAATATCTGCACAGCGAAACCTGTTCCATCTCTTTTCCCCCACGAGTGTTTGTATAATCAGTCATTAAAAATAGATCCTCACTACAGGtaagttacatttattttaggATTTCTG

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372416 True 2596 lncRNA 0.38 3 4517601 4527820

Neighbor

gene id symbol gene type direction distance location
LOC113543315 LOC108280769,LOC108423999 coding upstream 167057 4315743 ~ 4350544 (+)
wdr53 wdr53 coding upstream 209549 4300799 ~ 4308052 (+)
LOC113543011 LOC108280892 coding upstream 227491 4283167 ~ 4290110 (+)
LOC113543038 LOC108280160,LOC108424050 coding upstream 240643 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 254315 4258365 ~ 4263286 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 18315 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 55207 4583027 ~ 4590956 (+)
LOC113543019 zadh2 coding downstream 504429 5032249 ~ 5036445 (+)
rabgef1l LOC108280803 coding downstream 532210 5060030 ~ 5070433 (+)
LOC113543113 NA coding downstream 542798 5070618 ~ 5073139 (+)
G314402 NA non-coding upstream 132736 4379637 ~ 4384865 (+)
G314364 NA non-coding upstream 222527 4294865 ~ 4295074 (+)
G314362 LOC108280893 non-coding upstream 223872 4290254 ~ 4293729 (+)
G314222 NA non-coding upstream 517287 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 621916 3888027 ~ 3895685 (+)
G314609 NA non-coding downstream 252118 4779938 ~ 4780145 (+)
G314628 NA non-coding downstream 272832 4800652 ~ 4801103 (+)
G314636 NA non-coding downstream 318372 4846192 ~ 4846717 (+)
LOC117599956 NA non-coding downstream 356390 4884210 ~ 4893278 (+)
G314675 NA non-coding downstream 450201 4978021 ~ 4978966 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1028234 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1628213 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1841753 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1855202 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2331924 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 64620 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 260028 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 373650 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 560019 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 673201 5201021 ~ 5216591 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G21304 NA non-coding NC_053113.1 CM020910.1 32986048 ~ 32991893 (-)
striped catfish (Pangasianodon hypophthalmus) G24463 NA non-coding NC_047596.1 CM018542.1 10143009 ~ 10143237 (+)
bowfin (Amia calva) G152111 NA non-coding CM030142.1 CM030142.1 1245031 ~ 1253959 (+)