RNA id: XM_026941016.2


Basic Information

Item Value
RNA id XM_026941016.2
length 2896
RNA type mRNA
GC content 0.50
exon number 21
gene id ift80
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5249468 ~ 5322606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGTTTACAGTGTTATCGCGAGAAAAACATCAACTCGTGAGTGGCTTTTGAAATCTCGCGAGACAAACGTCCAACCGGCGGAGTGGAATGTTAAATCTCGCGAGACAAACGCCAAACCTGTAAGTGGACTGCCTGATCTCGCGAGACAAACTATGGCGAAGTGAAGGGCCGTGTGGAGCTTGATAGCTTAGCGGTGACAAAACACAAGAGCTGGATTTGTCTCGACAGCAAAGTACAGAATGAGATTCAAAACATCTCTGCTGAAGGAGCCAAAGCATAAAGAACTGGTCAGTTGTGTGGGCTGGATCACAGCTGATGAAGTGTACTCCTGTAGTGAAGAccatcagattttaaaatggaacCTGCTCACGAACGAGACCAGTGTGGTGGTGAAGCTCCAGGAGGACATCTACCCCATCGACCTCCATTGGTTTCCCAAGACTGTAGCTGGGAAGAAACAAGCTTTGGCAGAGATCTTCGCTCTCACCAGTACCGATGGTAAGTTCCACTTGCTGTCTAAGACGGGCCGCATTGAAAAGAGCGTGGAAGCGCATCGAGGAGCCGTGCTGGCGAGTCGCTGGAACTATGATGGAACTGCCCTCATCACAGCTGGTGAGGATGGCCAAATCAAGATCTGGTCTAAAAGTGGGATGCTGAGGTCCACTTTGGCCCAACAAGGATCTCCTGTGTACTCTGTAGCTTGGGGTCCAGACTCCGACAGGATACTTTACACATTTGGCCGGCAGCTCGTCATCAAACCTCTTCAACCGAGCTCCAAATCTCTGCAGTGGAAAGCTCATGATGGCGTTATTCTAAAGGTGGACTGGAATTCTGTGAACGATTTGATTCTATCTGGAGGTGAAGACTGTAAATATAAGGTGTGGGACAGTTATGGGCGGCCTCTCTACTCGTCCTCCCCCCACGACTACCCGATCACCTCTGTGGCTTGGGCTCCTGACGGCGAGGTGTTCGCTATGGGCTCCTTCAACACCCTCCGTCTGTGTGACAAGACTGggTGGTCATATGCTCTGGAGAAGCCGAACACAGGCAGTGTGTTCAGCCTGGCCTGGTCTGCTGATGGCACTCAGTTAGCAGGAGCATGCGGGAATGGCCAGGTCATCTTCGCTCACATTGTGGAGCAGCGATGGGAGTGGAAGAACTTTGAGATCACGCTCACTAAGAGACGCACCATGCAGgTCAGGAACGTGCTGAATGATGCAGTGGACACCTTGGAGTTCAGGGATCGAGTTATCAAAGCGTCACTCTCTCATGGTCACCTGGTAGTAGCCACCGCTCTGCAGTGTTTAGTCTACAGCACTAAAAACTGGAACACACCACTGATATTTGACTTGAAGGAAGGCACAGTCAGCCTGATCCTCCAGGCTGAGAGGCATTTCCTATTGGTGGACGGAGGAGGCATCTACGTGTACTCGTATGAAGGGCGTCTGGTCTCCGCTCCCAAGTTTCCGGGCATGAGGACAGATATTCTGAACGCGCAGACCGTCTCACTGAGCAACGATACCATCGCTGTACGTGACAAGACCGATGAGAAAGTCGTCTATTTGTTTGACGCTCAAACAGGAAAGCCCATTGGTGATGGCAAGCCTTTAACCCACAAGATGGAGGTGATGGAAATTGCCCTTGACCAGTGCGGAGCCTCCAAGGACAGGAAGATCGCCTTGATTGACAAGAACAACGACCTTTATCTGACCTCTGTGCGCAGGCTGGGCAGAGAGCAGAGCATGCACAAGATTGGCTCTATGGTTCACACCATGGCCTGGAATGACTCAGCCAACATCCTGTGTGGAATCCAAGACAACCAGTTCACTGTGTGGTACTACCCCAGTGCTGTGTTTGTAGACAAGGACCTGCTACCCAACACACTCTTCACCAAGGATGCCAGTGAGTTCAGCAGTGCTCCACATATCCTGAACTACACGGGCACGCAGGTGACAGTGAGGCGAGCTGATGGCTCGTTGGTGTACAGCGGCGTGCCACCCTACCCCACCATGCTGCACGAGTACACAGCCTCCGCTCGCTGGGAGGAGGCCCTCCATCTGTGCCGCTTCGCCAAGgatCAGGCCCTGTGGGCATGTCTGGCTGGAATGGCCATGGCTAACAGAGAGCTTAACACAGCTGAGACAGCTTACGCGGCCATCAGAGAGGTGGATAAAGTGCagtatataaaatttataagaTTGCCCTCTAAGGAATCCTCCCTGGCTCATATACTACTCTTCAGTGGACAAGTACAAGAGGCTGAAGCTACATTACTACAAACAGGTCTCATATACCAGGCCATTCAGATCCACATTGACCTCTTCAACTGGGACAGAGCTCTGGAACTGGCAGTGAAGCAcaaaacccatgtggacaccGTCCTTGCTCACAGACAGAAGTTCCTGCAAGACTTTGGCAAAGAAGAAACCAACAAGCGTTTCCTGCAGTACTCTGAAGGGgtggaggTGGATTGGGAGAAGATCCAGTCCAAGATTGAGATGGAGCTAgccaaagagagagagcgagcagccAACTCTTCTGTCAGGAGCAGCGTGGCCTCTCACCGCTGAAAAACAGACATTACCCAGCAAACTCTGCAGGATCATTGTTCTCACTCTGACCTGAGATCAGACTCCTGGAGTTGGAGTACTTTGGATAAGTAAATTTTGGATCATTCAGAGTAATGCGCCAGTTATCTCTTTCCTCTTGTTGTTCGTTGGTCAGCCTTGTGTGTTCTTTTGAACATATTTATGCTTCTGTAATGTAAATAAGGATGTAATCATTAAGCACTGATCTCTTTATAAGTAAATTTTGTATGCTGTCATATTTTTAGATGAAACAAAAGGCCTTATTTAATGATGTGCAAAAgctgtttaataaatacacacatcaaa

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19678 IFT80; intraflagellar transport protein 80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372881 lncRNA upstream 27645 5220646 ~ 5221823 (+) True G314800
TU372867 lncRNA upstream 32880 5216372 ~ 5216588 (+) False kpna4
TU372866 lncRNA upstream 126066 5122698 ~ 5123402 (+) True G314785
TU372728 lncRNA upstream 270502 4978021 ~ 4978966 (+) True G314675
XR_004580298.1 lncRNA upstream 356190 4884210 ~ 4893278 (+) True LOC117599956
TU372889 lncRNA downstream 718 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 46028 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XR_004580301.1 lncRNA downstream 51824 5374430 ~ 5383232 (+) True LOC117599958
TU372915 lncRNA downstream 52137 5374743 ~ 5374957 (+) True G314833
TU372908 lncRNA downstream 72706 5395312 ~ 5396474 (+) True G314826
XM_026940841.2 mRNA upstream 22761 5222533 ~ 5226707 (+) False trim59
XM_026940844.2 mRNA upstream 22761 5222697 ~ 5226707 (+) True trim59
XM_026941167.2 mRNA upstream 32877 5201021 ~ 5216591 (+) True kpna4
XM_026941224.2 mRNA upstream 51534 5196649 ~ 5197934 (+) True LOC113543161
XM_026941223.2 mRNA upstream 58069 5121697 ~ 5191399 (+) True ppm1lb
XM_026941193.2 mRNA downstream 18403 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
XM_026941243.2 mRNA downstream 393700 5716306 ~ 5723799 (+) True lxn
XM_026941314.2 mRNA downstream 459687 5782293 ~ 5783234 (+) True LOC113543227
XM_026941320.2 mRNA downstream 571902 5894508 ~ 5901565 (+) True shox2
XM_026941322.2 mRNA downstream 571902 5894508 ~ 5901565 (+) False shox2
trnat-agu_13 other upstream 29850 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 158371 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 291348 4937048 ~ 4958120 (+) False LOC113543089
TU373444 other downstream 571898 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 904111 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1614734 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1810853 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 2372928 7695534 ~ 7695919 (+) True G316413

Expression Profile