RNA id: trnat-agu_13


Basic Information

Item Value
RNA id trnat-agu_13
length 74
RNA type tRNA
GC content 0.54
exon number 1
gene id trnat-agu_13
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5219545 ~ 5219618 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372867 lncRNA upstream 2957 5216372 ~ 5216588 (+) False kpna4
TU372866 lncRNA upstream 96143 5122698 ~ 5123402 (+) True G314785
TU372728 lncRNA upstream 240579 4978021 ~ 4978966 (+) True G314675
XR_004580298.1 lncRNA upstream 326267 4884210 ~ 4893278 (+) True LOC117599956
TU372681 lncRNA upstream 372828 4846192 ~ 4846717 (+) True G314636
TU372881 lncRNA downstream 1028 5220646 ~ 5221823 (+) True G314800
TU372889 lncRNA downstream 103706 5323324 ~ 5323675 (+) True G314807
TU372887 lncRNA downstream 149016 5368634 ~ 5370815 (+) False si:dkeyp-97b10.3
XR_004580301.1 lncRNA downstream 154812 5374430 ~ 5383232 (+) True LOC117599958
TU372915 lncRNA downstream 155125 5374743 ~ 5374957 (+) True G314833
XM_026941167.2 mRNA upstream 2954 5201021 ~ 5216591 (+) True kpna4
XM_026941224.2 mRNA upstream 21611 5196649 ~ 5197934 (+) True LOC113543161
XM_026941223.2 mRNA upstream 28146 5121697 ~ 5191399 (+) True ppm1lb
XM_026940921.2 mRNA upstream 128272 5087839 ~ 5091273 (+) True sptssb
XM_026940920.2 mRNA upstream 128272 5088400 ~ 5091273 (+) False sptssb
XM_026940841.2 mRNA downstream 2915 5222533 ~ 5226707 (+) False trim59
XM_026940844.2 mRNA downstream 3079 5222697 ~ 5226707 (+) True trim59
XM_026941016.2 mRNA downstream 29850 5249468 ~ 5322606 (+) True ift80
XM_026941193.2 mRNA downstream 121391 5341009 ~ 5370897 (+) True si:dkeyp-97b10.3
XM_026941243.2 mRNA downstream 496688 5716306 ~ 5723799 (+) True lxn
TU372849 other upstream 128448 5088101 ~ 5091097 (+) False sptssb
TU372694 other upstream 261425 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other upstream 261425 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other upstream 261425 4937048 ~ 4958120 (+) False LOC113543089
XR_004580320.1 other upstream 526729 4592440 ~ 4692816 (+) False LOC113543063
TU373444 other downstream 674886 5894504 ~ 5896830 (+) False shox2
TU373737 other downstream 1007099 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 1717722 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 1913841 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 2475916 7695534 ~ 7695919 (+) True G316413