RNA id: XR_004580329.1


Basic Information

Item Value
RNA id XR_004580329.1
length 1273
RNA type misc_RNA
GC content 0.52
exon number 9
gene id LOC113543138
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6937340 ~ 6944990 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGCCAAAAGctcttgtgttgttgttgttgttcctcccACTGCAGCGGGAAAGCTACAAGCAGCTCTTCTCCTCTTTATCTCTAGCTAATGCTACTCATAAGCCTTGAAAACCAAAGTCGTTATCGTTTCCGGTGTACACTTTGTTAATGTTCATTTTGGAAACCTGGATATAATAATTAACACAAAGAGGTAAAGGGAGAGATGTCGTACTactcatcttcatcatctcgCAGTTCCTCCAGAAACTTGGAGTGTAAGGTGTATGTGGGAGATCTGGGAGGAGGAGCTGCTAAAGGAGAAATCGAAAGGGCCTTCGGCTATTATGGCCCTTTGCGCAGCGTTTGGGTGGCCAGGAACCCTCCTGGTTTTGCTTTTGTGGAATACGAAGATGCCCGGGATGCAGAGGATGCAGTGAAAGGAATGGATGGAAAGCTACTGGGTGGATCGCGTATTCGCGTGGAGCTGTCCACTGGCATGTCTAGGAAGAGCCGATATGGCCGAGCCAGTCGCCGTCCATTTGATCCAAATGATAGATGCTATCAGTGTGGAGACAGGGGACACTATGCCTACGACTGCTACCGCTTCAGCAAGCGAGGACGTCGAAGCAGaTCCCGGTCTCGATCTCGCTCCAGGTCAAGGAGCCGCCGCAACCGTTCACGATCTCGAAGCCGCAGCTATAACCGGAGGTACCGTTCTCCATCTTATTCAAAACGCAGGAGCAGGTCTGGCACTCCAGCTCGCTCAAAATCAAGGACTCCTGTTCGGAGTCGCTCTCGGTCTCGCTCTCGATCTGGATCTGCTTCGCGCTCTCGCTCCAGATCTAGGTCCCGCTCTCGCAGCCTTAAGAGGCGCAGAGTGCGGGAGTGGATGGCACTGACCAGGGCTCGTCCTTGCCATGTTAAACGTCCTCCAGGAGGGTGACAAAAGAGCTTACCCGAGATCAGCCTCCTGCCGCGCTGCTTTAAAGAGATCGTCCAAGGGCATCCTGCGCGTACTCAAACAGTTGTTCCACCCGCCCCACTCCCATCCCATGCACTACTACTGCAGACCAGAAATGCTGGGCTGAGAGTTTTGGGCTCCCCCCTTCCCTTTTTTCCTTCAAAGCTCTGGCTTCATGCTTAGCTTCTGAGaagggtgtgtgagagaaagagagagacgagagatcAGTCTTCAAGACCTCTGCGAGTGTGTCTTCGAGTTCTAGCATCCGTCGCTTCTCTGTATGTTGTTTCCGCCACTATCTGCAAAGCCATTCCAGGTCCCCCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374158 lncRNA upstream 2163 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 21799 6914261 ~ 6915541 (+) True G315894
TU374135 lncRNA upstream 42723 6894337 ~ 6894617 (+) True G315886
TU374111 lncRNA upstream 210652 6726474 ~ 6726688 (+) True G315862
TU374042 lncRNA upstream 283277 6646145 ~ 6654063 (+) True G315811
TU374244 lncRNA downstream 88957 7033565 ~ 7033806 (+) True G315968
TU374285 lncRNA downstream 183083 7127691 ~ 7129877 (+) True G316000
TU374593 lncRNA downstream 481853 7426461 ~ 7433424 (+) True G316288
TU374628 lncRNA downstream 560471 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 620478 7565086 ~ 7568068 (+) True G316339
XM_026941279.2 mRNA upstream 33258 6896246 ~ 6904082 (+) True LOC113543204
XM_026941090.2 mRNA upstream 467229 6434266 ~ 6470111 (+) True LOC113543083
XM_026941079.2 mRNA upstream 538055 6384010 ~ 6399285 (+) True LOC113543080
XM_034314660.1 mRNA upstream 538055 6384025 ~ 6399285 (+) False LOC113543080
XM_034314662.1 mRNA upstream 538055 6384026 ~ 6399285 (+) False LOC113543080
XM_026941228.2 mRNA downstream 918 6945526 ~ 6958889 (+) True hnrnpl2
XM_026941229.2 mRNA downstream 918 6945526 ~ 6958889 (+) False hnrnpl2
XM_034297786.1 mRNA downstream 17335 6961943 ~ 6969531 (+) False ech1
XM_026941532.2 mRNA downstream 17336 6961944 ~ 6969948 (+) True ech1
XM_026941533.2 mRNA downstream 17336 6961944 ~ 6969531 (+) False ech1
TU373737 other upstream 710100 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1040510 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1717722 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1846243 5088101 ~ 5091097 (+) False sptssb
TU372695 other upstream 1979220 4937048 ~ 4958120 (+) False LOC113543089
TU374286 other downstream 188851 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 750926 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1318731 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1324101 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1867349 8811957 ~ 8812820 (+) False LOC117599964

Expression Profile