G315811


Basic Information

Item Value
gene id G315811
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6646145 ~ 6654063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374042
tttttttcagaacGGTTTATTTCGTTTTCACTAAAGCAGTAAAAAGGCCCAGATTTCCTGGAACAAGTCAAATGTGCACCGTGGGAAAAAGTGCAATAGCCCTACCCCTTTAGTTAAATTAGATGGAAATGCCACGGCACATTAGACTTATATGACCACAGACAGGTCAAATACAGCACCAGGtaggaaaaacacatttcagatCAATTCGAAACAGTACATGTTACCAATGACATGAAATATTAATCATTAAGAAGAACTCATTTAATATTAGATGGGTAATACACTGGCTAGTGACGCTTATTAAGAGAAGCTTAGTCAATTAGACAAAATATAGacataacaacacacaccagggattatcacagacacacatacaaacacacatacacacacaaacacacacacactttagctctcagacacacagctcacatcttaaaaaaatcttctacAGTATTACAGATTTCCACAGTGACTAAAATGCATAAGCTactgaaagcaaaacaaaacagaaaacaatattttgttATCATGTGTACAAACTTGGTAATAATGTCAAGGTCAAGTTCACATGgtgcaaacaaaaacagcaacaaagcAAATTAACCTGCAGTTACATGAGCCATCATATTGTATGCATACGATATATAATAGCTAATTCTTTGAATATAAAGGGGTTAAACATCTGTAGATCAAATGATGGAAGCACCAATTCCACATGTTTAAGGAATGTTAGAAGTGTCATTTGTTTCAGGTTCAAAACTAGTCTATTGTAAAATCAGCactattatttctttttcagtaaaTTGAATTTTTTGTTAATTGATAAAAATGCATATGTCTTTCACTTTTGCATCGTAGCAACATTATCTTAGCAAGTCAGCTCTtcatatataatgtaatttgcAAAAATGGACGAGACGATACAGTGGATCTTATCAGATGCCTCGAAACACTTTTCAACACTTTTCACATGCCATTAGGTCTTTTGCAGAACTGTTTCATAGCTGAGCTAAAGTATGCACGATACAGCCTCAATCATATTCAACATTGTTGACAACTGCTGATGTTTTTGTACCCAGAAATCATTGAGATTTTGACCTGCTTTTAGATCAGGACTCTGATTTACTGTAAACGATATGGATGAAATACGAGGATACATGTCCCCAGAGTCACATTCTGTAGGATTCTTCATGACCACTGGATGGAATTATGACTGAAATAGCTTCACAACCCTAATGCCAATAGAGACCAATATccaaaataagttttaaaaagtttggAAAGGcctatttacaaaaaatatcacCGCTGATGCtttgtttgaatgtttttgaCTTGTTTGGAGCACAGGAGTCTCCACAGAGGTACTTGATAAaccgttttttttatttaggcaCAAAAGTCCATCAcctataaatatgaacaaacaaGAATAAAGAGCATTAGATAATGCAAAATTATAAACCAATTCTGTTACACAAGGTCTATCAACCATTGCCACCACCATCAGAAGGGAAATATCATGGCTTTTGTCTTTCAAAATcttgagaaaaaagagaaattagtGCCTCAAGGTCTACAATGACAAATAGTGAACCTGGTTATTAGTTTCTTGATTTGGTGTCCCTATCTACAAAAAGAGACATCAGCAACATGTTGGAATTTCACATGAACAGCTGTAATGTTCATCCTGTTTCCTCAGCTTCTCTTTgggtttgtaaaaaaaaaaaaacatttaatgtaggtataaaacatatttttgtacatGATAGGATTGTTTTTGCATATCAAATGTACATTCTAGATCATGCAGTAGCACCATTGTTTCTTGAGGTCATTTCACATCCCAAGAGAGTGTTTACTTTCTCCTCCTGCCACAGTATTTGCCTTGGCAAGCTGCGCCACC

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0031214 biomineral tissue development biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU374042 True 1912 lncRNA 0.35 2 6646145 6654063

Neighbor

gene id symbol gene type direction distance location
LOC113543083 axl,LOC107572376,LOC107663740 coding upstream 176034 6434266 ~ 6470111 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding upstream 246860 6384010 ~ 6399285 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding upstream 370035 6274739 ~ 6276110 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding upstream 378271 6266493 ~ 6267874 (+)
LOC113542971 LOC108280887,LOC103033590,LOC108424028 coding upstream 379735 6263628 ~ 6266410 (+)
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding downstream 242183 6896246 ~ 6904082 (+)
hnrnpl2 hnrnpl,LOC107730992 coding downstream 291463 6945526 ~ 6958889 (+)
ech1 ech1,LOC107598793,LOC107677099 coding downstream 307880 6961943 ~ 6969948 (+)
LOC113543373 prss16 coding downstream 317489 6971552 ~ 6982646 (+)
meis3 meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131 coding downstream 343421 6997484 ~ 7008738 (+)
G315660 NA non-coding upstream 139459 6505940 ~ 6506686 (+)
G315665 NA non-coding upstream 170252 6475689 ~ 6475893 (+)
G315650 NA non-coding upstream 238390 6406122 ~ 6407755 (+)
G315648 NA non-coding upstream 242544 6403402 ~ 6403601 (+)
G315647 NA non-coding upstream 246166 6399740 ~ 6399979 (+)
G315862 NA non-coding downstream 72411 6726474 ~ 6726688 (+)
G315886 NA non-coding downstream 240274 6894337 ~ 6894617 (+)
G315894 NA non-coding downstream 260198 6914261 ~ 6915541 (+)
G315901 NA non-coding downstream 280886 6934949 ~ 6935177 (+)
G315968 NA non-coding downstream 379502 7033565 ~ 7033806 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 418905 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 744579 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 1275248 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1426527 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 1429554 5201021 ~ 5216591 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 283277 6937340 ~ 6944990 (+)
G316001 NA other downstream 479396 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 928250 7582313 ~ 7598164 (+)
G316413 NA other downstream 1041471 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 1097631 7751694 ~ 7756961 (+)

Expression


Co-expression Network