RNA id: XM_034298035.1


Basic Information

Item Value
RNA id XM_034298035.1
length 2009
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC117595783
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1125904 ~ 1234282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATATACATAGACCcaacactgagtgtgtgaagtTCTTACTGAAGAAGAGATGAAGATGCTGCACTTGGCTACGATTGTGCTCACGCTGTCCGGTGTTCTCTCTCAGAGCAGTGATTGGGGTGTGAAATATCCCGATAAGCCTATCTGTGCTGTGAGAGGATTCAGTGTCTCCATTCCCTGTAGTTATTCTTATCCAACATCAAATTCCAATATTCAGGTGACGCAAAAGCTTTGGTGCtcaatgaacacaaacacaggaaggtGTTTGGACCCACCGTATGTTTATAGCAGCTCATCAAACACCAAGTCAGACTTTGAGTACGCTGGAGACGACAAATCAAACTGCACTTTGTTAATCCACAACGTACAGTTCAGTTATTCTGGAGAGTACAAATTCAGATTTATAACTGATCAGCCTAGTGACAGATACACAGGTGATCCTGGAGTGATTCTACAAGTTGCAGATATAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAACCCTTAAACAAGGAGACTCGTTAAatctgatgtgtgatgtgaagtgcacacacagttcCTCACAGTTTGTGTGGTCTAAGAACAACGAGCGCTTACCTGCATCAGGACCCGTTCTTCACTTTCCTGCTCTAACCGTGAGGGATTCTGGGAATTACACCTGCACTTGGAAAACCAACGAGGCGTCAGGATCTGAAACGATCAGTCTTCAGGTTGAGGGTGTTCTCAATCACAGAGACTGGGGTGTGAAATATCCTGATAAGCCGATCTGTGCTGTCAGAGGATTCAGTGTCTCCATTCCATGTAGTTATTATTATCCACAGCAAAATTATCAGGTGATAGAAAAGCTTTGGTGCTCAATGAACTCAAACAGAGATCAGTGTCCTGGCCCACCGTATGTTTATAACAGCTCATCAAACACCAAGTCAGACTTTGAGTACGCTGGAGACGACAAATCAAACTGCACTTTGTTAATCCACAATCTACAGTCCAGTGATTCTGGACAGTACAGATTCAGATTTATAACTAATGTGATCGATGGCAAATGGACCGGTGAACCTGGAGTGATTCTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAAACCTTAAACAAGGAGACTCGTTAAATCTGACATGTGATGTGAACTGCACACACAGTTCCTCACAGTTTGTGTGGTCTAAGAACAACGAGCAGTTAAACACACCAGGACCCGTTCTTGACTTTCCTGCTCTAACTGTGAGGGATTCTGGGAATTATACCTGCACTTGGAAAACCAATGAGACGTCAGGATCTGAAACGATCAGCCTTCAGGTCGAGGGTGAAAATCCTGAAAATCCTTATCACTGGCCAATCTGGATCATTGTTTTAGTGACAGCTGGACTGATTTTCATCATCGTAGCTATCCTAGCTGTGATTTACAACAGGAGGTTTTTGTGTGAGCGCAGGAGTGTCGACACTGAGCAGCAGAAGGAGGACGCTTCTGATATCGACATTGATGTCCAGCAGAAGGAAGACAATTCTGATATCTACGCTAATGTCCAGCAGAATGAGGACGATTCTGATATCTACACTAATGTCCAGCAGAAGGAGGACGATTCTGATATCTATGCCAACGTCTAATAGCAATGAGCTGATCACAGTTTCACACCTCATGCTCAACTTAGTCTTCTTCTTGTGAATTTCCTGTGTGAGATGAAAAAGTTACACACCCCTTACATTTCCTTTGTGTTGCATTTGAGCTTAATTTCATGATAGACCACTTAgccatttattacatttattggaATTTCAGTCATGGAGCAATTTTTGAAGTTGGTTTAGAAACGATTCTTAacttctatttatttaatacttttgCTGTATAATTACAACTGATACACAAATGAAACCTACACAACCTGTAACAGAAACCAACACACACTTGTCTGTATACACGGCATATTTAGTAAATACTTCCAGTCTCTCTGTGTTAAACCACATCTTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384805 lncRNA downstream 42216 1119771 ~ 1186077 (-) True G324726
TU384810 lncRNA downstream 58962 1144586 ~ 1169331 (-) True G324731
TU384808 lncRNA downstream 100676 1126844 ~ 1127617 (-) True G324729
TU384710 lncRNA downstream 272901 887291 ~ 955392 (-) False G324649
TU384712 lncRNA downstream 272901 951850 ~ 955392 (-) False G324649
TU384797 lncRNA upstream 60583 1294865 ~ 1314580 (-) False scap
TU384802 lncRNA upstream 169007 1403289 ~ 1405287 (-) False kif13a
TU384959 lncRNA upstream 331677 1565959 ~ 1568506 (-) False LOC113533106
TU384971 lncRNA upstream 434820 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA upstream 434820 1669102 ~ 1674907 (-) False LOC117595768
XM_034297959.1 mRNA downstream 126176 1043313 ~ 1102117 (-) False nek11
XM_026911508.2 mRNA downstream 126176 1047583 ~ 1102117 (-) False nek11
XM_034297958.1 mRNA downstream 126176 1047583 ~ 1102117 (-) False nek11
XM_034297960.1 mRNA downstream 126176 1047734 ~ 1102117 (-) False nek11
XM_026911513.2 mRNA downstream 308384 915919 ~ 919909 (-) True si:dkey-11p23.7
XM_026924893.2 mRNA upstream 39111 1273393 ~ 1275839 (-) True LOC113533061
XM_026924640.2 mRNA upstream 47164 1281446 ~ 1285879 (-) True LOC113532917
XM_034298041.1 mRNA upstream 47164 1281446 ~ 1285792 (-) False LOC113532917
XM_034298037.1 mRNA upstream 52707 1286989 ~ 1295529 (-) True LOC113532999
XM_034298080.1 mRNA upstream 76593 1310875 ~ 1342071 (-) True scap
XR_004576952.1 other downstream 126176 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 500659 726627 ~ 727634 (-) True G324579
TU384497 other downstream 871672 350738 ~ 356621 (-) False slc4a7
TU384829 other upstream 136194 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 195650 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 853977 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 2003419 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3729335 4963617 ~ 4977453 (-) False ubr5

Expression Profile