RNA id: XM_034298080.1


Basic Information

Item Value
RNA id XM_034298080.1
length 8285
RNA type mRNA
GC content 0.47
exon number 23
gene id scap
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1294865 ~ 1342071 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAttaaaaagagtcgactctgaGTTAAATGACAAGATTCACTGAAAAGAGCAAATCGTCGCTAAAGAAAAATTTGATTCTTTTCAGTGAATCAGATCTCTTGGCTCAGCACATGAATCCGAGTCGACTCTGAGTCAAATGATTTGAGTCACTGAAAAGAGGCAAATGACTCAGATCACTTGGCTCAGctcatcaaaaaaaaagagtcgactctgaGTCGAATGATCTGATTCACTGACAAAAAGCGATCTGTTTCTTTAGTGACCACAAGATGgcggagtttgtgtgtgttttatagaaaGCAGGTTGAAGTTGTGGGttcatgttacacacacacacacacacacacacagctaactTGAATCTGTCAAAATAGTGTATATATTCGACTGTGTGCTTTAATAtcctgttttattaaaaaacaaaaaaaacacaaagctgcAGCACAGATCGTCCAGATTGTGAAATAAATCGCTTCTATAGGAAGAAGAGAAGCTTTTCAGGTGCCCGGATGAACTCCGGTGCCGCCCAGTTGGAACACACGAGCCCGATGGCTGCgagctgacctttgaccttcgACCGCCAGGATGATGTCGGTCAGAGAGCGGCTCCGCCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTCTGCGCCTCCTACCCAGTTCCCATCATCCTCTTCACCTCCGCCAGCATCCTGGCCTGCTGttacCCGCTGTTGAAGCTGCCCCTGCCGGGAACAGGTCCTGTAGAGTTCACCACCGGGGTGAAGGATTACTCCGTCCCTTACCACGAGCCTCAGAGTGACCCGGGCGAGCGTCCTGATTGGTATCACGGCGCTCCAGTCGCGTACATCCAGCAGGTGTTAGTGAAGGCGGCCGTGTCTCCGTGGGACAGCAGCTTGGTGCCCGTGGACGTTTTCCGCTCGCCGCTCGGACGAGTCTTCAGCCTCCTGGAGGAGATTCGTGACCATGTTTATGCTGACAGAGGATTGGAGAGTTTGTGTCTCCAGGTGACGGATCTGTTGCCGGGGTTACGGCGCATGCAGTCTGTGCTTCCTGAACACGGCTGCCTGCTGGTTTCCCCCGGCAACTACTGGCAGAACCGACGAGACGTGTTCGACTCGGATCCAGACATCCTGAAGACCGTCCAGCAGCACGAACCCAAAGGCCTGCACACGTCCGCCACGCTGAAAGaccTGCTGTTCGGGGTTCCAGGGAAAAGCACAGGCGTCAGTCTGTACAGTAAAAAGCGAGTCGTCACCTACACCATCACCATCGCCTTCAGCAGTTATGACTCCAGgtttgtAGGCAGCCTGCGTGCCCGTCTGAAGCAGCTCCACCCGTCGGTGAACTGCAGCCTGCGTGAGGATCACATGGTGCACATCCACTTTAAAGAGGAGATCGGCATCGCTGAACTGATCCCCCTCGTCACCACCTACATCATCCTCTTCGCCTACATCTACTTCTCCACCCggaaGATCGACATGGTGAAGTCTAAGTGGGGTTTGGCCTTGGCTGCCGTGGTAACAGTGCTCAGCTCTCTGCTCATGTCTGTAGGACTCTGCACTCTGTTTGGCCTCACGCCCACGCTCAACGGAggGGAGATCTTTCCTTACCTCGTGGTCGTGATTGGGATCGAGAACGTTCTGGTCCTCACCAAGTCTGTGGTGTCGACCCCGGTGGACCTGGAGGTCAAACTTCGAATTGCACAAGgtctcAGCAGTGAGAGCtggtccatcatgaagaacatGGCCACTGAGCTGGTCATCATCCTGATTGGATACTTCACCTTGGTTCCTGCTattcagGAGTTCTGTCTGTTCGCTGTGGTGGGTCTCGTCTCCGATTTCTTCCTGCAGATGTTCTTCTTCACCACTGTGCTCTCCATCGACATCCGCCGCATGGAGctggctgATCTGAATAGGCGTCTTCCAGCCGAGGCGGGGATGCCCCCTCCCAAACCCGGCCCCTTACGGCAAAgagaagccccgccccctcctcGTCCCTCCCCCCACACCATCACGCTTCAGGCCCCGGCGTTTAGGAACCTGCGCTTACCCAAGAGGCTCCGCGTGATCTACTTCCTGGCGCGCACCCGTCTGGCACAACGCATCATCATGGTCGGCACTGTGATCTGGATCGGGATCCTGGTGTACACCGACCCCGCCGGTCTGAGGACGTACCTGGCCGCTCAGGTGTCAGAACAGAGCCCTTTGGGAGAGGCGGGGCTTCCTCCGCACCTGGGCGTGGCTCCTGTGTTCCCAGGCGGAGACCCAACTAGCACCCTCaatgtacttcctgctccagaCCCCACCCCTCTGCCCGAGAACCAATCGCAGGGAGCGGATGCCCCAGGTCCCGCCCCGTTGGTCAGCCCTCAGATCACGTGGGGTTCGGAGGACGAGGAGGTGTGGAGGCGACTGTCGTTCCGATACTGGCCCTCGCTCTTCGGCTACTATAACATCACGCTGGctaagagGTATATCAGCATCCTGCCCGTCATCCCCGTCACGCTGCACCTGAGCCCTCAGGAAGCCATCGAGATGCGACACCCTCAGGATACCCAGCATGCACCACGGGTCAGCGCCAGAACCGCGCAGCTCCAGACCGACCTCACGCTGTACAAggtTGCTGCACTGGGCCTCTTCGCCGGGGTTCTCCTGGTTCTCCTGCTCTTCTGTCTCTATCGTGTTCTCTGTCCTCGTAACTACGGACAGAATGGAGTCCAACATGGCCGCCGTCGCCGTGGAGACCTGCCCTGTGACGAGTACGGCTACTCGCCGCCGGTCAGCGAGATCTCACCACTGCTGCTCAGAGGGCATAgcatggATATCGAGTGTTTAGCGAGTGATGGTATGCTGCTGGCCAGCTGCTGTTTAGCAGGACAGATTCGTGTTTGGGACGCGCAGACCGGGGACTGTCTCACTGTCATACCTAATAatggTTTGAGAAGGAGCAGCAGTAGTGGATGTTGGGATCAGCGTGACGGCTGGGATCACTACGACCCCGACTCCTCCCCCAGGGCGGAGTCTTGCACCACGTCCACGCCGGTTAGCGAGTATGCGGTGCGCCGGAGGCCGACCCGCCCCGCCATGTTTGTGGACCAGCCGGACCTCACGGCGCTGATAGACACCAACTTCAGCGAGCTGCCTCCATCACACGCGCCCTCAGACTGCGGCTTCGACTTCGGCGGCCTGGTGGAGAGGGCGTATAAAGAGCACGAGGCGACGTCGCCTCCGGCAACAATGCCCACGCCGCTTCCCCCGACTCCGCCCACTCCACCGGCCCCGCCCACTGAGAGGCTGAGCATGCCGTCAGGAGACTGGGAGAGTTCAGTGTGGTCCATGGAGCTCAGGGGAAACCTGATCGCTGCAGGGAGGAGCAACGGCAAACTGGAGTTGTGGGATGCAGTGGAGGGACTGCTGCGGTGTTGCAATGAAGACGGATCCTCGGGAATCACCGCCCTGGCTTTCCTTAACAATAGgatCGTTGCAGCTCGTCTGGATGGTTCTCTTGATTTTTTCACCGTGGACATCAACAAGCCGCTGGGTTTACTGCAGCACcgagggcCCCCGGGTTGTAGTAGTCTGCCGCCGTCGCCGTGTTACAGCAGCGAGGATGCGATCAGCTGCCAGCTAACACGCTCGGTTCAGTGCGCTCACCAGAAACCCATCACTGTGCTCAAAGCTGCAGCGGGTCGAGTCGTCACAGGCAGCCAGGACCACACCGTCAGAGTGTATCGTCTGGAGGATTCCTGCTGCCTCTTCACCCTGCAGGGTCACTCAGGTGGCATCACCGCCATTTATATAGACCAGacgATGGTCCTGGCCAGCGGGGGGCAGGATGGTGCCATCTGCTTATGGGACGTCCTCACAGGAAGTCGTGTGAGCCATGTTTATGGTCACCGCGGCGATGTGACGTCGCTGGTCTGCACTACTTCCTGTGTGATCAGCAGCGGGTTGGACGATCTCATCTGCATCTGGGACCGGAGCACCGGCATCAAGCTCTACTCCATACAGCAGGAAGTGGGCTGTGGCGCCAGTCTGGCAGTGATTTCCGAGAGTTTATTAGTGACCGGAGGTAACGGCTGCGTGTCGTTCTGGGACCTGAACTACGGGGACCTGCTGCAGACGGTGTATCTGGGTCAGAACAGCGAGGGGCAGCACGTGCGGCAGCTCCTCGTGCTGGAAAACGCCGCCATCGTGTGTGACTTTGGCAGCGAGCTCAGCCTCGTCTATGTGCCCTCTGTACTGGAGAAGCtggactaaacacacacacacacacagaagtttagaagtgtgtgtgtgtgatgtgatggacTGTCGTCTCTGCTTGGgcttttacttcctgtttctttcaGGAAAAGCAGGAAGTGCAGGTTTGGACAGAAATtgtgtacaaataaaaatacacaatgatTTGAAagatgagagaatgagagagagagagagagagagagagtgagagagtttTAAAGCcctggggattttttttttaataacatgccagtagtGGGACAGAAATAGGGCatgacatttgtgtgtgtatgtgtgagttcttgctttttttttctaaaggaaGACTGGACCTTAAgagctttttttatattttttgctagaaaaagactcaaaaaaaaaaatcaaatcgcAATGTATTTTTTACACGCGGGGTGAACGGGACGCTGAGCATCGCTGCCTGAAGaaagagagctgtgtgtgtgtgtgtttaagagcgAGATGTAGACGTTTACATGGAGAATAACtgctgatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagaaagaattGTTCCTAAGGCTTACTGTAATTAGATGAACCTGTAAAGGAGGTGTGTTGAGCGAGTGTTGAGGGAGACGTgtcactttttaatatttaaaaaaatccattatttaTTAGTGATAAATTCTAACCGTTTGTACGAAAATGCTAAACTCTCATTTATTATTGTCAGATCTTTAATGTATAAAAGGCGCTGActaatttaaactttaattatataatagtatTCATTTGGACAGTGAGGGTCTGCTTTCTTTAATTGTGAAAtgagtttttctttctccagTTGGTTGGACGGGAGAGAAATGACAGCACTACTACTGAACTGATGATCATACATTaggggtgtaaacctcaggcttcaaCACGAGATATGATATTATTCCGATTCTTAATACAATGATCCGATATTTTTGACGAttccactgaatctgctacgatatgatacaatacGATTCGATTTAGTAGCCTCCGGTCGACGTGTGATGAAATTTACAGCTAATTGGCAAATGATGACaaagagaaggactattttattattttatacacaccAGTTGTTTGTCCCTTTTCTgataataatcagattaaaattGTTGCATTGATTCATTTCGGTCGTTGTCTTTAAAATCGTCCGATCGTTACGCACCTACTATGACCTGAAAGCCCGGATTCGTAACCCGATTTATCCGCCCCACgttttgttttctaaaaaagAATTGACTTTAACTCAGTAGAGAAAGAGTAGTCTCCTGTCAACAGTACGTCGTTTAACTCATTATCAGTTCACACCTTCGGTTCTTAGCGCATCAGCTTCATTCAGCTGGCAGAGTTTGtcataataattcattataacaCCATCGTGAACATAGTGTTGAAAATGATTTCTCTgtcttcatttttaaacatttttaaaatgtttttatttgtttgttgtagaAATGCAACTCCACGAGCAGCTCGCACCGCAGTCAGAGCTTAGGgatgtgctgataatcagttacATCGTACATCACGATACGATATTACCAATGTGAGCTCTACAGGAGGATCGAACCCGACCTTCTCGCCACAGCCCAGGTTTGATTACGCTAAAGATGAAGTGTAGTCCTGTCATAAACCATGAGAACAGCTTAGACTCGTAATAATGCTGAGAAGTATTTTATATGCTTGACATGCTTGAcctacatttttcctttttttctgtacatatcATAGAACGagtggaattttttatttttttttttaagtattttcttAACAGTTttgtccttttatttatttacttttttacacCTGAATGTCTACCCTGGAGTTAAAGCAGATAATCACAGACGGTTCCTTTAAAAAACACTACGCATAGAGAAGAAAGTCAGCGTCACCAGGAAATGCTTCGTGTaatcaatgtgtttttttttctcaacgaataattttttaaagccTCCTTTCAAATTTCGACGTTCGACCAAATTGTAATTTTGATGTCATTTTACTTAAACCTGACTCTGCAACATGCACTGCATTCACACCCTTAAAGCTGAGTAGAAACGCACAAAACAGCACAGATATGTTAAATTATTAGcaatatgaatgtaaatattaagGTGTGTTGCTGCGTGGAGAGATTtagtttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgcagtTAGTTTCCAAAGCTGTGTAGTTTGTTTGGTAGAAATGTGAATGATGTTTTTatccatatttctttcttttgtgtgtttttagatgAGTTGAGAATGACAGTAGCACAGATACTGGGGTTattagagatgatgatgatgatgatgatggtgatgatgatgatgagctcTAAAGAAATGCGAGACGGTGTGTTTCGAAGTGTGTGTTCCATTAAGTAGGgttaggctgctttcacacttgatGTCAATGAACTTTTCTGAAATGTTAAATCTTTTTCAATTTTACAAGCTTTGctatggccaaaaaaaaaaaaaattctaaaatcataattaaattattaacaaattattcTATCTGCATCCATGAATTCCGCATGCCTTTTTGTTTTGGTAAAATGTGCGCTGGTTGTTGAGAAAAAACTCCAAGTGTGAAAGCATCCTTCATGTATGTTTAGCATTTAAGCTTTAGAAAGTTCATTTGTGAAATGCACCTTCCATTCCAAGTTTGAGTTTTTCAGTCAAAAATTAGGGCTATAAtatcatggatttttttttttttttttttactacctGTTCAAAAACAGGAACCAAACTTGTGGTTCTGGTTCATTCTCCATTAACTTAAGGAATGACAGTGACTGTTAAAGTGACTGCATCATCATTACAACCACGATAACGCACTTGTTAAGTTCAGCATGGTGATTAAATGTTGGTTCTTTGGTTCAGAAGTTCAGATCAGCTGTAGCTAAATATCTGATGTATCGTTTCACAGATGAAGGAGTTTTAAATTTCCACGACTTGTCTTTCATCGGAAACAGCAGCACCAACAACAAACCAGACTGTTCTGGTCTTTTTTGTGTGATACAAGACCAATTAGCTGTAAACAGAAGGCCATCTTGATGCCAAGCCTGAGCTTTTTTGATGTACCAAAAATACTCATTGTACTGGCTCCTTTGGTACCGGACTAGTGGAGGaaaaatttgattgaaaaaGCACTGGTCCACTTTTCTGGTGCTAAAGGCTCTACTTTGTGCAGTGGATAAACGCATGCGGATTAAATAAGGCTGTTAATTAAGGATGGGCAATGTGACCATATGCAAGATACAATCTTCCGACCGACTGCACGTTTCACATACATGGTTATGTGCAGGGCCTGAAAGTCTGGTGAAGTTCAGAATTTGATTTCCAAATCTGGAAAAATTGGGAAGTTAGCGaatgttttggggaaaaaaaacagatgtttgTTCAAGTTAGATCTAAGATACCAGTAAGGTTCTACATCACTTGTCCATAGACATTCCCTTATTTTCAGCTTCTAAAGAATGTGAAACCTCAATGTGAATAGTCTGAATTGGAAAAGATCAGGAtgtttttcactgaaatttCAGGAACTTCACTAGAGACAAATTAAATCCCATTAAACCCAGTGGTGTCAGACCATCTAActaaatttgcatatttctgaGCAAACAACAGTAGTATACTTGTGTAAAACCAATTGCGCACTGTgtcatgaaaataatttttgccATTCCTGGTACTGACTGGGTTTCCTAAAATAGATGCTTGGAAATTTCATACACCCTTAATCAGATTACCATGcccactatttaaaaaaaatcagtcacaCATGTTTTAGGCCAGTGTCGGTATGCAAATGCTGGAAAGTTGCACTGTATACTTCAGGAAGGAGGGTACAGCAAATACTCTGTTCCATTTTTATTAACAGGGCAAAGGTTTTTGTACTAATATGCAAATAAAGGTTTACACACCTTGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384805 lncRNA downstream 124798 1119771 ~ 1186077 (-) True G324726
TU384810 lncRNA downstream 141544 1144586 ~ 1169331 (-) True G324731
TU384808 lncRNA downstream 183258 1126844 ~ 1127617 (-) True G324729
TU384710 lncRNA downstream 355483 887291 ~ 955392 (-) False G324649
TU384712 lncRNA downstream 355483 951850 ~ 955392 (-) False G324649
TU384802 lncRNA upstream 61218 1403289 ~ 1405287 (-) False kif13a
TU384959 lncRNA upstream 223888 1565959 ~ 1568506 (-) False LOC113533106
TU384971 lncRNA upstream 327031 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA upstream 327031 1669102 ~ 1674907 (-) False LOC117595768
TU384975 lncRNA upstream 327031 1669102 ~ 1674907 (-) False LOC117595768
XM_034298037.1 mRNA downstream 15346 1286989 ~ 1295529 (-) True LOC113532999
XM_026924640.2 mRNA downstream 24996 1281446 ~ 1285879 (-) True LOC113532917
XM_034298041.1 mRNA downstream 25083 1281446 ~ 1285792 (-) False LOC113532917
XM_026924893.2 mRNA downstream 35036 1273393 ~ 1275839 (-) True LOC113533061
XM_034298036.1 mRNA downstream 76593 1125904 ~ 1234282 (-) False LOC117595783
XM_034298082.1 mRNA upstream 908 1342979 ~ 1346644 (-) True elp6
XM_026924586.2 mRNA upstream 5958 1348029 ~ 1359488 (-) True sacm1lb
XM_026923904.2 mRNA upstream 18986 1361057 ~ 1368677 (-) True gpatch3
XM_034298290.1 mRNA upstream 27683 1369754 ~ 1387049 (-) True smpd5
XM_026924542.2 mRNA upstream 45686 1387757 ~ 1391259 (-) True LOC113532867
XR_004576952.1 other downstream 208758 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 583241 726627 ~ 727634 (-) True G324579
TU384497 other downstream 954254 350738 ~ 356621 (-) False slc4a7
TU384829 other upstream 28405 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 87861 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 746188 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1895630 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3621546 4963617 ~ 4977453 (-) False ubr5

Expression Profile