RNA id: XM_026924586.2


Basic Information

Item Value
RNA id XM_026924586.2
length 5295
RNA type mRNA
GC content 0.44
exon number 20
gene id sacm1lb
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1348029 ~ 1359488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtgggcggggcttcagcGGAGGCAAAATGGCGACCACCTACAGCAGCTTCAGCTTGCACACGACGCCTGAGAAGTTCTACATCGAGGCGTGTGACGATGGCGCTAACGAAGTCCTCGCTATTGACCGCGTGTCTACGGAGATGACGCTGATAGGGATGAAGGACATCCCGCCTTCAGCGGTGACCCGGCCGATATGCGGCATCATGGGAACGATACGGCTGGTAGCAGGCACGTACCTCCTCGTGATCACCAAGAAGAGGAAGGTGGGGGATCTGCTGGGACACGCCGTGTGGAAGGCCGTGGAGTTCGACGTGATCTCGTATAAGAAGACGGTGCTGCACCTCACAGACACGCAGATGCAGGACAACAAGGCCTTCCTCGCTATGATCAACAACGTCCTGAACACAGACGGCTTTTACTTCGCCACCGACTacgacctcacacacaccctgcagcGCCTCGCCAACACCAGCCCCGAGTTCCAGGAGATGAGTCTGCTggagaggGCGGATCAGAGGTTTGTGTGGAACGGCTACTTGCTAAGAGACTTCAGCACACAGCCTGAGCTGCACAGATTCGCCTGTCCTGTGATCCACGGCTTCATCGCTATGAAGTCCTGCTGCATCAACGGGAAGGTCTTCGACTGGAACCTCATCTCCAGGAGGAGCTGCTTCCGCGCCGGCGTTCGCTACTACGTCCGAGGAATCGACTCTGAGGGTCATGCGGCAAACTTTGTGGAGACAGAGCAGATCGTTCAGTACAGCGGCGCCAAGGCTTCGTTCGTACAAACACGTGGCTCCATTCCGTTCTTCTGGTCCCAGCGTCCAAACCTCAAATACAAACCCAAACCGCAGATCAGCAAGAGTGGCAATCACCTGGATGGTTTTCAGAGACATTTCGACTCGCAGATCATAACCTACGGCAAACAAGTCATTTTAAATCTGATTAATCAGAAAGGTTCTGAGAAACCGCTCGAGCTCGCCTTTGCCAAGATGGTGGAGAGTCTCGGCAACGGCATGATCAAGTACGTGGCCTTTGACTTTCATAAGGAGTGCAGCAGGATGAGGTGGCATCGCCTGCAGATCCTGGTGGACACGGTGGCTGAGCAGCAGAACGAGTTCGGCTTCTTCCTGGTGGACGCAGACGGAACGGTCCAAATGCAGCAGGAGGGGACGTTTCGTAGCAACTGTATGGACTGTCTGGACCGTACCAATGTGGTTCAGAGTCTCCTGGCCAGACGATCGCTTCAGTCTCAGCTGCAGAGAATGGGCGTCCTCCATGTTGGACAGAGAATCGAGGATCAGGCTGATTTTGAAAAGATATACAAGAACGcgtggGCCGACAACGCTAATGCGTGTGCTAAGCAGTACGCTGGTACAGGAGCGCTGAAGACAGACTTCACACGgacagGGAAGAGGACACAGTGGGGGTTGGTGATGGACGGCTGGAACTCGATGATCAGGTATTACAAGAACAACTTCTCGGATGGATTCAGACAGGACTCCATCGATCTGTTTTTAGGAAACTATGCTGTGGATGAAGTGGACATGAACACGAATCTCCATGAAACCAAAGACTGGAAGTTCCTCAcgCTGCCAATCATCATGGTGGTGGCGTTCTCCATGTGCATTATCTGCCTCCTCATGGCTGGTGAGACGTGGACGGAGACGTTAGCGTACGTGCTGTTCTGGGGAATGGCGAGCGTGGTCACGGCCGGCGTGATCCTCTTCAACGGCCGAGACTTCGTGGACGCGCCCAGGTTGGTCCAGAAGGAGAAGATGGACTGAGAGTGCGTGTGTGGAAAGCAGCTGGGTCCCGTCGACTCTTCGTCCTCGTCCTCATCCCCGTCTTCGTCCTCGGGACTTTCCTTCTCTCGTCTGCGCCGTGACTGGAGCCTGTACTGAACGTCATCATCATCGCCATTCTGTCACGATGGAAGAGGCacggaggaggagggaggaacaGAAGAAGAGCAGGGGCCAGGCGGGGCCAAACGGGTGGGCGTCGGTGAGACGGACTCGAAGCCACGCCCACCTGCTGCTCTCCACACTGCAGTCTCATCTCAGAGGAACAGCCCGGACCGAAGGGGGCGCTGTTCTTCATCTCAGAGCTACACTGGAGAAAACGCATCTGTGTGACCCTTCGACGtcttcgacacacacacacacacacaccataatgtagcttgtattttaataatgatgttTATGTCCTTAAGAAAAGGTTCCTGGCCCCCTTTCTGGCACTTGTATGGCAAATTCAGGGCGGGCGATATgacaatattttatcatttatcgCGATATATTGCGATATATCATGAGTATCATCTGTATTTGTAGACACTAAACCCAGTTGCATGAGTCATAAGAGATTTAGACCAATCACGGATTCAGTAaacaagtgtttattttttgtaagcactgaaatgaaaaatatttgacaGCATTCTGTGttacaactaaaaaaaaataatatatgtaacTTCTGTATTGTGTGTCTGGAAAATGTCTGAAGTGGTATGTGATTATATTTATTGCCGTATCGCTCGCCTCTGTGCCAAAATTCAGTCTGATGTTGATAATCGGATATGTTTATGTTTCAGTTGCCATGCCGATCTGTTGATTCAGATTTACCTCGCCTGTCCAATCTACGTTAAATGAGCGGTTCGGCCAAAAGTGAAATGTACACGTATTTCCACTCGAACACAAATGTGGCCTGAAtagatgtttggtgtgtgaagtttgcttctttagttttgcccTGGAGCTAATGAAGCTAAGAAGTCACAAAAgctcagacctgccaacctttacgcattttgcgtaggagctcCAAAATACATACGCTAAAAAATACGAAAAGTCTTATAAATACGCCAAGTCTTCATTTTTCCTCTCAATAAAAGTGACAGATAAATCAGTCGACATGGATGACTGACAGCCGCGTAGGTGTTTTGAAATAGTTGACTCGCTggaagccacgccccctttcTCTCATCTCACATTAGCGATCTTTCAGCCGATGCGCTCGGCTCGTCTCGGCTCGTCTCATCTCGGCTTTCTGTCACTGTgcatggagaatgttttgagttcattaatatgaaataaaatcagcgtatgtttgacttagctaacattagacaatcAGTTAACTGTAATTATTAGGGATGTAACAGATTTTTGGTcaattgtggggaaaaaaaagtttttttgggGCCAGAAGAGATAAAAGGATGAAACCTttgactgaattaaaaaaaaagattaaacaggCCTACAATGAAGTGCCAAGTCTAACACTACTGTATCATTACTACTAAAATTATGTTCAATTAGAAAGTGATATAAAACTCTGTTCAGCCAGATTGAGCAGCAGATcagcagtgaaaatgtcagccatCACTACGAAGGACATGATTTATAAAGAGATTATAATTAATCTGCTTCATCTGAACTACGCATTATTTCTCTTTAGGGTTGCCAAGTCTGAAAGCTTAGAGCCATGGAATTAACATAGTTCAAACTGCATAACACCATTTATACATAAACGCTTATCAGATCAAATCTGGAGATGTGTGACCATCAGAATCAcatctttaaactttaaactttgaaacaggaagtgtacCTTTCATTTTTGGCctttattgtgtttataatgatttaatatCACACGAGTGGCCACTTGCAGAACAAGGCTATTTCAAGAACAACAACCTGAACCTCAGCAGCAAGAACAACACACTCAGTTCAGTCACATTAGCTTGCTAAcctgctaattagctagcttgataaataaataatgaagttgCTTCAGCATTGTAGATGCTGTAGATGGCCAATCGAGTGCTgtatagtttttgttttattgcttcTGTTTTGCCACGTAACGTGGGCGCGTTTAAAACCAGGATTTGAACGCGGCTAGCCGTGTTTGCCGGGTTAGCCGCGTTGCAATCACACGTTCGTGCATTTATAAAGCTAATAAGGTACAGACCTCAACCAGAGACTGGGATATAATAatggtttaatggtttaatgtttatttaatgtctgccattttctttttgtctcattttattACTTTGTCCATTTTGATTTTACTGAAACGTTTTATGTAGTCGAGTGCCTGCTAAAAGGTGGACATGTGCCGATATGAAATGTTTGTCATGATAAATTGCCCAAATTGTATCACATTTTGCAATAATATCGTGATATCGCTATGTTTAAATTTTTGataacactgacatttttcaatATGGTGGAAGTTCAGTTAGCGGTTAATACTTTTACAGTGAATTTTAGTCTTAGAAAGTCTTTTCTTGGAAATTAACCagcacatctgaggaaaatgttgatgtttttgaTCATTTCGTCTCATTTCCATGATCACTGTGCCTTTACAATGTCCATATAAATGACTTTTAATGCtgtgtgctagctagctacatttttaGCTTCAGGCATTAGCTATATTTATTCTCACAACATTAATCCCCTGAAATTTGAGTGTCTTATGTGTGACTTTGCATGTTGAAAAAGGTCAAAATTTACAAGATTCCTTTAAACACTGCATTGCGAAATTGAAAAACGTTATTCAGCAATCGGAGTGAGGTTTTGtcggccatgtttttttttttttttttctttttttcagaactCTTTATTTGTGATCAGAATTATACCTAAAGTAAGAGACTTTAGTAGACAGCTTTATCCTGGAGCAgtctcctcacaaaaaaaatattttgaagtgTCCACACTAATCATAttgtacatattaaatattgtgtAATCGAATATCGGCACGTGCCTAGTGAACATTCATCTGACACGCAGTGATATCATGACCTAGTGGAGTGGGACCAAGTAAAAATGACTCGCCTCTGAGCTGTGCCACatttattttaggtttttattttgtcattgttgttgttaattcACATTTTTGAGCATTAACTCTGTAGCTTTGTAAATTCCACGTGGAATGGATCGCCTGCCTTAAGCTGGGGAAGAAAGGAGTGGACATGAATACCACCATCTTGCATCTGCCTTATCAGAGAATGTAAAAGCAACAGCGGTTAATATTGTTATGAAAATTATATAATCATGTCTGTATTGTACTTCCTTTTTCCAGTAGACTCTCAGATCTGAATTTATGGACTTACAGATCAATCAATTCGACAGAAGAGCCTCAGCCAAATCCTCTGTTCAGCTAGTTTTGATGCCAAACCTTCACACATCACTTTGTctaatgcattatatatatttaattaaaggtGCACTAGGATTAAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K21797 SAC1, SACM1L; phosphatidylinositol 4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384797 lncRNA downstream 33449 1294865 ~ 1314580 (-) False scap
TU384805 lncRNA downstream 161952 1119771 ~ 1186077 (-) True G324726
TU384810 lncRNA downstream 178698 1144586 ~ 1169331 (-) True G324731
TU384808 lncRNA downstream 220412 1126844 ~ 1127617 (-) True G324729
TU384713 lncRNA downstream 392637 951850 ~ 955392 (-) True G324649
TU384802 lncRNA upstream 43801 1403289 ~ 1405287 (-) False kif13a
TU384959 lncRNA upstream 206471 1565959 ~ 1568506 (-) False LOC113533106
TU384971 lncRNA upstream 309614 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA upstream 309614 1669102 ~ 1674907 (-) False LOC117595768
TU384975 lncRNA upstream 309614 1669102 ~ 1674907 (-) False LOC117595768
XM_034298082.1 mRNA downstream 1385 1342979 ~ 1346644 (-) True elp6
XM_034298080.1 mRNA downstream 5958 1310875 ~ 1342071 (-) True scap
XM_034298081.1 mRNA downstream 17077 1310875 ~ 1330952 (-) False scap
XM_034298037.1 mRNA downstream 52500 1286989 ~ 1295529 (-) True LOC113532999
XM_026924640.2 mRNA downstream 62150 1281446 ~ 1285879 (-) True LOC113532917
XM_026923904.2 mRNA upstream 1569 1361057 ~ 1368677 (-) True gpatch3
XM_034298290.1 mRNA upstream 10266 1369754 ~ 1387049 (-) True smpd5
XM_026924542.2 mRNA upstream 28269 1387757 ~ 1391259 (-) True LOC113532867
XM_026924935.2 mRNA upstream 33228 1392716 ~ 1400966 (-) True grinab
XM_034298092.1 mRNA upstream 43776 1403264 ~ 1451000 (-) True kif13a
XR_004576952.1 other downstream 245912 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 620395 726627 ~ 727634 (-) True G324579
TU384497 other downstream 991408 350738 ~ 356621 (-) False slc4a7
TU384829 other upstream 10988 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 70444 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 728771 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1878213 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3604129 4963617 ~ 4977453 (-) False ubr5

Expression Profile