RNA id: TU399149


Basic Information

Item Value
RNA id TU399149
length 783
lncRNA type sense_over
GC content 0.44
exon number 4
gene id LOC117595892
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2185892 ~ 2351749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTCTCTCCCTGGAATCTAATCAGATCTTCCTACAAACCATAGTGACACAGACAGGAAGTAGCTCCCACAGTAACCAGGAAACAGTTTATTACATCAAGAAGAAGATCAGAGAGAATTCCTCaacagagaaatccatcaatctgttccactgtctgtaTGAACTtgatgatcattctctagttgAGGAAATCCAACACTACCTGCAATCTGGAAATTTACAACAAATTGAACTTTCACCTTCTCAGTGGTCagctgtggtgtttgtgttactggcATCAGTGCAGGAGCAGGATGTGTTTGTTCTTAATAAATATACCAACAAATACTGTACATCAGATGAGGTTCTCCTGAAACTCCTGCCTGTGGTTGCAGCATCCAGAAAAGCTGAGTTTAATAATTGTGGCCTAAATGAGAAAAGTTGTGCAGCTTTGGCCTCAGTGCTCATCTCTGAATCCTCCaatctgagagaactggatctgtctaGAAATGAACTCAGACACTCAGGAGTGAAGCgtctctctgctggactggaaaatcctcactgtaaactggagacactgaggttgtgtgattgtgatatctcagatgaaggctgtgctgctctgacttcagctctgagatcaaactcctcacacctgagagaactggatctgtctgAGAATAAAGtcagagactcaggagtgaagtgtctctctgctgtactggagaatcctgactgtaaactggagacactgaggttgcgTTATTGTGatgtctcagatgaaggctgtgctgctctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577082.1 lncRNA upstream 4984 2242185 ~ 2259536 (+) False LOC117595896
XR_004577081.1 lncRNA upstream 4984 2245940 ~ 2259536 (+) True LOC117595896
TU399175 lncRNA upstream 20290 2243493 ~ 2244230 (+) True G336991
XR_004577080.1 lncRNA upstream 60779 2201780 ~ 2203741 (+) True LOC117595895
TU398980 lncRNA upstream 280024 1965976 ~ 1984496 (+) False G336849
TU399240 lncRNA downstream 108219 2397103 ~ 2397302 (+) True G337052
TU399249 lncRNA downstream 161635 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 218676 2507560 ~ 2511667 (+) True G337066
TU399294 lncRNA downstream 295167 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 508219 2797103 ~ 2797348 (+) True G337113
XM_034298849.1 mRNA upstream 24097 2209792 ~ 2240423 (+) True LOC113546299
XM_026945946.2 mRNA upstream 100997 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 121498 2074883 ~ 2143022 (+) True rims2b
XM_026946068.2 mRNA upstream 198610 2059332 ~ 2065910 (+) True cthrc1a
XM_026946066.2 mRNA upstream 225473 2026407 ~ 2039047 (+) True mc5ra
XM_034298846.1 mRNA downstream 13261 2302145 ~ 2340261 (+) True LOC113546301
XM_034298847.1 mRNA downstream 69244 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA downstream 69244 2358128 ~ 2388198 (+) False LOC113546300
XM_034298643.1 mRNA downstream 159332 2448216 ~ 2453296 (+) True LOC117595862
XM_026945970.2 mRNA downstream 252598 2541482 ~ 2551073 (+) True rdm1
TU398943 other upstream 318654 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 605061 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 928990 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 937013 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 1128413 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 28141 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 69232 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 69244 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 69244 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 69244 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile