RNA id: TU399154


Basic Information

Item Value
RNA id TU399154
length 821
lncRNA type read_through
GC content 0.48
exon number 7
gene id LOC117595892
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2185892 ~ 2351749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aAGAATAAACTCAGAGACTCAGAAGTGAAGCGTttctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtgattgtggtgtctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggaacTGTCTGGGAATAAACTCAGAGACTCAGgagtgaagtgtctctctgctgtactggagaatcctgactgtaaactggagacactgaggttgtgtggttgtggtttctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactgaatctgtcTTGGAATAAActcagagactcaggagtgaagtgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgcgTGGTTGTGAtatctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtcttGGAATGAACTCAgagattcaggagtgaagcgtctctctgctgtactggagaatcctgactgtaaactggagacactgaggttgtgtggTTGTGgtgtctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtcaTGGAATAAAGtcagagactcaggagtgaagtgtctctctgctgtactggagaatcctgactgtaaactggagacactgaggttgcgTTATTGTGatgtctcagatgaaggctgtgctgctctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398980 lncRNA upstream 202077 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA upstream 202077 1982429 ~ 1984496 (+) True G336849
TU398494 lncRNA upstream 343603 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 344037 1821132 ~ 1842536 (+) True G336481
TU398210 lncRNA upstream 429169 1756185 ~ 1757404 (+) True G336261
TU399240 lncRNA downstream 108219 2397103 ~ 2397302 (+) True G337052
TU399249 lncRNA downstream 161635 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 218676 2507560 ~ 2511667 (+) True G337066
TU399294 lncRNA downstream 295167 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 508219 2797103 ~ 2797348 (+) True G337113
XM_026945946.2 mRNA upstream 23050 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 43551 2074883 ~ 2143022 (+) True rims2b
XM_026946068.2 mRNA upstream 120663 2059332 ~ 2065910 (+) True cthrc1a
XM_026946066.2 mRNA upstream 147526 2026407 ~ 2039047 (+) True mc5ra
XM_034298840.1 mRNA upstream 183239 1991814 ~ 2003334 (+) True rnmt
XM_034298846.1 mRNA downstream 13261 2302145 ~ 2340261 (+) True LOC113546301
XM_034298847.1 mRNA downstream 69244 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA downstream 69244 2358128 ~ 2388198 (+) False LOC113546300
XM_034298643.1 mRNA downstream 159332 2448216 ~ 2453296 (+) True LOC117595862
XM_026945970.2 mRNA downstream 252598 2541482 ~ 2551073 (+) True rdm1
TU398943 other upstream 240707 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 527114 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 851043 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 859066 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 1050466 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 28141 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 69232 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 69244 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 69244 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 69244 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile