Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU399163 |
| length | 944 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 6 |
| gene id | LOC113546300 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 2358116 ~ 2392537 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU399155 | lncRNA | upstream | 67309 | 2185892 ~ 2290807 (+) | False | LOC117595892 |
| TU399154 | lncRNA | upstream | 69232 | 2186573 ~ 2288884 (+) | False | LOC117595892 |
| TU399149 | lncRNA | upstream | 69232 | 2264520 ~ 2288884 (+) | False | LOC117595892 |
| XR_004577082.1 | lncRNA | upstream | 98580 | 2242185 ~ 2259536 (+) | False | LOC117595896 |
| XR_004577081.1 | lncRNA | upstream | 98580 | 2245940 ~ 2259536 (+) | True | LOC117595896 |
| TU399240 | lncRNA | downstream | 27027 | 2397103 ~ 2397302 (+) | True | G337052 |
| TU399249 | lncRNA | downstream | 80443 | 2450519 ~ 2551280 (+) | True | G337059 |
| TU399260 | lncRNA | downstream | 137484 | 2507560 ~ 2511667 (+) | True | G337066 |
| TU399294 | lncRNA | downstream | 213975 | 2584051 ~ 2585796 (+) | True | G337075 |
| TU399337 | lncRNA | downstream | 427027 | 2797103 ~ 2797348 (+) | True | G337113 |
| XM_034298843.1 | mRNA | upstream | 6367 | 2260256 ~ 2351749 (+) | True | LOC117595892 |
| XM_034298846.1 | mRNA | upstream | 17855 | 2302145 ~ 2340261 (+) | True | LOC113546301 |
| XM_034298849.1 | mRNA | upstream | 117693 | 2209792 ~ 2240423 (+) | True | LOC113546299 |
| XM_026945946.2 | mRNA | upstream | 194593 | 2156555 ~ 2163523 (+) | True | LOC113546187 |
| XM_034298463.1 | mRNA | upstream | 215094 | 2074883 ~ 2143022 (+) | True | rims2b |
| XM_034298643.1 | mRNA | downstream | 78140 | 2448216 ~ 2453296 (+) | True | LOC117595862 |
| XM_026945970.2 | mRNA | downstream | 171406 | 2541482 ~ 2551073 (+) | True | rdm1 |
| XM_026946093.2 | mRNA | downstream | 184581 | 2554657 ~ 2556829 (+) | True | ifnphi3 |
| XM_034298644.1 | mRNA | downstream | 196616 | 2566692 ~ 2568040 (+) | True | LOC117595863 |
| XM_034298394.1 | mRNA | downstream | 237270 | 2607346 ~ 2660278 (+) | True | arhgap27l |
| TU399169 | other | upstream | 36699 | 2317025 ~ 2321417 (+) | False | LOC113546301 |
| TU398943 | other | upstream | 412250 | 1876274 ~ 1945866 (+) | True | G336822 |
| TU398432 | other | upstream | 698657 | 1657317 ~ 1659459 (+) | True | G336433 |
| TU398302 | other | upstream | 1022586 | 1269809 ~ 1335530 (+) | False | G336334 |
| TU398322 | other | upstream | 1030609 | 1325816 ~ 1327507 (+) | True | G336350 |
| TU400576 | other | downstream | 1982446 | 4352522 ~ 4355029 (+) | True | G338163 |
| TU401842 | other | downstream | 3969431 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU401948 | other | downstream | 4234581 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 4340939 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 5912884 | 8282960 ~ 8285204 (+) | True | G340208 |
