RNA id: XR_004577078.1


Basic Information

Item Value
RNA id XR_004577078.1
length 6063
RNA type misc_RNA
GC content 0.42
exon number 15
gene id LOC113546300
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2358116 ~ 2392537 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAGACTTTCTGAAGCCTCATCACCTTTTAAAAGTGCGTCTGAACAAACTCAAAGATCAAGAAACAGCGAGATTAACGCCAACACAACAAGGACTGTTGAGTAAAGAAGAGACCAGGCCTGGTCATATGCAGCTGTCTGTCCATTACCAATAACCTTTCTTTATGAATGGTGAAAGATGGATCACTGTAATCCTGACCAGCCTGCTCAATCTCCACAATTAAAAAACAGaGCAACCCAGATAAatagatcagactcaccaggaccaagctgtgtgtccatgaagagtgataGGTCTAAGGATTTCCCACCAATGtttaaagagaaaagagaatctTCATCTGGATACAGTGTACTGCAGCAAGCAGGAGACAAAACACAAGAAAAGATCATAAGCACTGATACAGGTGTACTGCAGCAAGCAGGAGACAAAACACAAGAAAAGATCATAAGCACTGATACAGGGTGTAAGTTTGTAGACACTGGACCTCATCTTCAGGACAGCTGcaaagtaaatctgataaaaaagTTTCAGTATGTAAATGAGGTGATAACAAACCAGGGAAACCCAACACTTCtcaatgagatctacacagagctctacatcacagaagGAGACAGTGGAAaagtcaataatgaacatgagatGAGGCAGATCGAGGCAGCATCCAGGAGAGCAGCAACAGAGGAAACACCAATCAAATGCAATGACATCTTTAAGCCCTTATCTGAAGAAGACAAACTCATGAGGACCGTTTTGACAAAGGGAGTTGCTGgcattggaaaaacagtctctgtgcagaaatTCATTCTAGACTGGGCTGAAGGGAAAACAAATCAGGACATTCATCTCATATTTCCACTTCCTTTCAGAGAGCTCAACTTGATGAAGGATCAAACACTGAGTCTGATGGAgctccttcatttctttttaaaggagataaaagaaacaaacatttccAGCCTGCACAAAgttctgttcatttttgatGGTTTGGATGAGTGTCGTTTCCCTCTGGATTTCCAGAACACagtgagattgtgtgatgtaACTGAATCAGCATCCGTGCATGTGCTGCTGATAAACCTGATTAAAGgcaatctgcttccctctgctctcatcTGGATCACCTCCCGACCAGCAGCAGCTGATCAAATCCCCTCTCAGTGGTTTAATCGAGTCacagaggtacgagggttcAATGACCCACAGAAGGAGGAATATTTCAGGAAGAgaatcagtgatcagagcctgagcaacagaatcatcacacacttgaAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggattttagccactgttctagagagaatgttggaggaagcagagagtggagagatctccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAAGAAAAAGTACACAAAGAACCAAGAGACAGATAAGGAAATTGTTCTGAAACTGGGTAAACTGGCTTTTCAACAGCTGATGAAAAgtaacctgatcttctatgaagAAGACCTGAtggagtgtggcattgatgtgaCAGAAGCATCAGTGtatgcaggtgtgtgtacacagaTCTTCAgggaggagtttgggcttcaccagAGTAAAGTGTACTGCTTTGTTCATCTGAGCATTCAGGAGCATCTTGCAGCTCTATATGTGCACCTGACATTCATGGctgaaaagagaaatgtttttaaaaagccaATATTGCGGATGTTGAGGCAGAGAATTACAGTCTCAGATGTACACAAGAGTGCTATAGATCAGGCTTTACAAAGTGAAAATGGACATCTGGATCTTTTCCTTCGATttcttctgggtctctcactggagtctaATCAGATCCTCCTACAAAACATAGTAACACAGACAGCAAGTAGttctcacagcaaacaggaaacagttaaTTACATCAAGAAGAAGATCAGAGAGAATCCCTCaacagagaaatccatcaatctgttccactgtctgaatgaactggaGGATAATTCTCTAGTTGAGGAAATCCAACACTATTTGCAATCTGGAAATTTACAACAAAGCAAACTTTCTTCTTCTCAGTGGTCagctgtggtgtttgtgttactgacaACAGTGCAGGAACAGGACttgtttgtacttaaaaaatatacaaaaaaacactgtacatcaGACGAGGTTGTTCTGAAGCTCCTGCCTGTGGTTGCAGCATCCAGAAAAGCTCAGTTGAATAATTGTGGCCTGAATGAGAAAAGTTGTACAGCTTTGGCCTCAGTGCTCAGCTCTGAATCCTCCaatctgagagaactggatctgtctaagaataaactcagagactcaggagtgaagcatctctctgctgtactggagaatcctcactgtaaactggagacactgagGTTGTGTGAATGCGgtgtctcagatgaaggctgtgctactctgacttcagctctgatatcaaacccctcacacctaAGAAACCTGGATATGTCTAGGAATATAATAGGAGATTCAGGAGTgatgtgtctctgtgctgtattggggaatcctcactgtaaactggagacactgagggtGTGTGGTTGTGATATCTCaaatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaGGAATAAACTCAGAGACTCAGGACTGAAGCgtctctctgctggactggagaatcctcactgtaaactggagacactgaggttgtgtgatTGTGGTGTCTctgatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaAGAATAAACTCAGAGACTCAGAAGTGAAGCGTttctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtgattgtgatatctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccgtCACACCTGAGAAACCTGGATCTGTCTGGGAGTAAActcagagactcaggagtgatgtgcctctctgctgtactggagaatcctcactgtaaactggagacactgagactttgatattctgggaactGCCAGAAGTCCGGAGTTTTGAGATCTTAAGGAGCGTGGTGGATTGTGACGTGTTAGAAGACTGGCTAGATACgtgggagctaaaccatttagagccttgtatCAACAGTCCATTTTCTATTGTGAGCTCCCCTGAGAAAGGGTAATACTACTGCATGATGGAACTGATGTGGAATTTGTCTGGCCACCcttaaatgcaatattttttcacCTCATTGAGAACAGCATCAGCCACATGCTGCTGCTGGATTTCCCGGAGTCTGTTCTCCGTAACAGGTTCTTTGATCCCAGAGAGGCACCAGCAGTTTGTGATCCatctcaaaaaaagaaaagtaagacCGATCAGGAAGTCAGAGATATGTTCACATGTCCAGGTAATGGCTAGAGCCTCTTTTTCGATTTGGGCGTATCTCTGCTCCATACTTGTAAGTGCTATAGATGTATATGCTATGGGCTTTAACtctttgttttcttgcttttgAAGTAACACTGCTCCCAGTCCATATGATGATGAATCAGCAGAGACAATTGTGTCAGCTTTTGTATTATATAGGGCCAGACCTGGTGGTGTAATGAGTTGCCTCTTGATGCTGTCAAAGGCTCTTTTTTGTGGCTCTCCCCAAAACCACATATTGTCTTTCCTCAGAAAGTCTCTCGGTGGCTGTGTTTTTTCTGCAAGATGGGGAGAAAACATTCCAAGATGGTTAATCATTCCAAGGAATCTCCTAAGCTCACTAGTGCTTGTTGCCTGGCTCATGCATGTGAGCACTCTCACCTTGTTTGGACATATGACCCATCAATGATCTGGCCCAGAAACTTTATGCTTCTCTTGGAGAATTCACATTTATCGTTGAGCATCAGACCAGCTTTTTGTAGCTTTTCAAGTACTGTGAAGAGGTGGTGATCATATAATATTTGTGTTGTCCCAAACACCAAAATGTTGTTCATGTGGCAAAGCACATGATCCAGCCCTGCTAGGATTTGTGATAGTCTTTACTGAAAGTGTTCTGGTGCTGATGCAATGACAAAGAACACACAATTAAAACAGAACCTTCCAAATGGGGTAGTAAAAGTCCTGAGCAAGGCAGAGCTTTTTGATAATGAGATTTGCCAAAATCCAGAGTTTCATCAGGCTTTGAAAAGACTTTTGCTCCCTGTATGTGTATCTCCCATTTCCCAGCACTATTTAGTTTTGTTAAATACACACAGGTCCTTACAGTTTTATTCACTTTTGGAACAACAACCATACCTGCACACCAGTCAGTTGGTTGTTTAACCTTGGAAATCACACCTTGCAGCTCCATGTACTCTAGCTCCCTTTTCACCTTTGACATTAGATGCAAAGGAATGTGCCATGGCATAGACAGCAGAAAGGACCGTGCATCAGACTTTAAAGCAATTTCATACTCCCACTCAAGTTGACCTAGGCCTCTGAATAATTTGGGGAAATGCCTTCTAACTGACTCCTCTAAGTTCAGGCTTACTGTGTCGATCCTGGCTACTACACCTAGTGCTTTAATTGCTGGCCCACCCAATAGAGCTGCCTTCAGACCAGACACAATGTAAATGTCCTTAATTGAGCTTGTACGGTTTGTGCTAAGCTTGCTTGTGAACACCTCAATAACTGGCAGTGGGTATTGTCCTAGACCGTGCagtatttttaaagttttcttcAGTTTACTGAACAGTCCTTTTTTGTTCCACTCCTCAGGCACCACTGTTACATCTGCTCCAGTGTCAACTTTAAACAATGCATCACTGCTACCAAGTTTTAGACTTATCAGACAAGGACTGTCTGTTGTGTCAGTGTTAACTGCGCCAAGGAAGGCAACATTTCTTTCTGCTCAGGTGTCCTTTGTGTACACTTCATTAATAGCCCCAGACCTGCATAATGTCCTTTCTTTTTGCATTGTTTGCAGCAATGGTGTAATGTAACTAAGTACATTTACTCAAGTACTTTAAAAATTTGAGGCACttgtactttacttgagtatttcCATTTTATGCAACTTTATACTTCTACTCCACTATATCACAGAGGCAAATATTGTACTTTCTACTCCATTACATCTGAATGACAGCTTTAGTTACTAGTTACTTTtcagattacaatttttcatacACTTCCTGTCCAGTGAAAACTCATATCTCCAAATGTGTTGATTTTGAATGTTTGTGATAAACTGAAAGATTAAGTTTTATAGTTTGAGAAAATTATGGGTTgagaaaattgttttatttcttaatctaaataaactatttaagACCCCCTTGGATTAGCTGAAAAATGCATTGTCAAAAAGCTGAAAACAGGGCTGTTTTTATGAGCTCAACCCCAGCTGAACCCTGAGTTCAGACTGGCCATTTATTCAGCTGCTTAACTCTTCTTTTAATTGTTAAATCTCTGCTGCTCACAAACAGCAGAAACTCTACTGCCACTTTGCCTTTAAAGTTGGATTTAAGCATCTCTTGCTGCTTTTAAACCAGCTTGTCTGATGAATGTGGGTGATTGCTCTGTCCAAGGTAAGTCCTGCATCCATCTGAAGTTGCTCTGATAACTTCTTTTCTCGCAGTCCCACAACTAATCTATCTCTGATCATTTGGTTATGCAGCTGACTGCCACAATGTTCTGCTATGCAATATAGTGCAGTAATAAAACTGTCTGCTGTCTCTTGTACTTCCTGGTATCTTATATTAAACTTTGCACATTCAGTTGTTATGTTCCTGCGAACCACAAAGTGTCCATCTACCTTAGCCTTAACAGTGTTGTATTCACTGGCTTCAGCATGTGTGAGCTGCAGTGATgttgtgtgtttgtgatatCTCAGTCGAAGGCTGTGATGCTttgacttcagctctgagatcaaactcCTCACACTTGAGAGAACTGGATTTGTCCTGGAATAAActcagagactcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399155 lncRNA upstream 67321 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA upstream 69244 2186573 ~ 2288884 (+) False LOC117595892
TU399149 lncRNA upstream 69244 2264520 ~ 2288884 (+) False LOC117595892
XR_004577082.1 lncRNA upstream 98592 2242185 ~ 2259536 (+) False LOC117595896
XR_004577081.1 lncRNA upstream 98592 2245940 ~ 2259536 (+) True LOC117595896
TU399240 lncRNA downstream 4625 2397103 ~ 2397302 (+) True G337052
TU399249 lncRNA downstream 58041 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 115082 2507560 ~ 2511667 (+) True G337066
TU399294 lncRNA downstream 191573 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 404625 2797103 ~ 2797348 (+) True G337113
XM_034298843.1 mRNA upstream 6379 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA upstream 17867 2302145 ~ 2340261 (+) True LOC113546301
XM_034298849.1 mRNA upstream 117705 2209792 ~ 2240423 (+) True LOC113546299
XM_026945946.2 mRNA upstream 194605 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 215106 2074883 ~ 2143022 (+) True rims2b
XM_034298643.1 mRNA downstream 55738 2448216 ~ 2453296 (+) True LOC117595862
XM_026945970.2 mRNA downstream 149004 2541482 ~ 2551073 (+) True rdm1
XM_026946093.2 mRNA downstream 162179 2554657 ~ 2556829 (+) True ifnphi3
XM_034298644.1 mRNA downstream 174214 2566692 ~ 2568040 (+) True LOC117595863
XM_034298394.1 mRNA downstream 214868 2607346 ~ 2660278 (+) True arhgap27l
TU399169 other upstream 36711 2317025 ~ 2321417 (+) False LOC113546301
TU398943 other upstream 412262 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 698669 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 1022598 1269809 ~ 1335530 (+) False G336334
TU400576 other downstream 1960044 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3947029 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 4212179 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 4318537 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5890482 8282960 ~ 8285204 (+) True G340208

Expression Profile