RNA id: XM_034298846.1


Basic Information

Item Value
RNA id XM_034298846.1
length 4194
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC113546301
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2302145 ~ 2340261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGGCCTGGTTGTACACAGCTGTCTATCCACAAACAATATCTTTTCTTTACTAATAGTGAAAGATGGATCACTGTAATCCTGACCAACCTGATGGGTCTCCAGAATTAAAAAAGAGcatgctacagagagaaagaagcaaaacagaacagaagatCATAATCACAGATTAAGAAGTGAGAAGGGTCAGAAGTGAGACCTGGACAGTGGTACAAGTCTATAGCTACTGAACCTCATTTTCTGGAGAGATGCAAACTAAATATTCTAAGGAAGTTTCAGCATGTAAATGACAAACCAGGGAAGCCCAACACTTCTCAATGAGATCTACActgagctctacatcacagaagGAGACAATGGAAaagtcaataatgaacatgaggtgagacagatcgAGGCAGCATCCAGGAGAGCAGCAACAGAGGAAACACCAATCAAATGCAGTGACACATGTTTTTAATGGCCTGGGAGAAAGTGGTTGTGCAACCTTGGCTACAGCACTCAGCTCAGAATTCTCCactctgagagaactggatctgtctgAGAATAGCCTCAGAGACTCAGGAGCAAAGCTACTTtttgctggactggagaatcttcactggaaactggagaaactgaggCAAGAAGAATGGATTTAAGAACATTATGAGAAATGAACTTGTCCTTGAGTtaaactgctgtggtaaaagTTGTATCTTGAACAGGGAGGGAGGATCAGGGGAAGAAAGGGAGGAGAGAGTCACCTGAAACTCCATGTTATACTGGAACTGATTTCTCTCTCACAGGAAAATAAGAGGAAAATGGAATAAACTCTGACAGTGATTACTGCCAGTGGCCCCAAACGGATACCTGTAGCAAAGTGTTCTCCAGATTACGACTTCTGGCTCTCCACTACCCATGCAGAGTGATGCATCCATGGATCCTCTTCCATTCAAAGAAGGAGACCCCTCATCTGGACACAGTCTAACCCAGGTAAAGAGACCAGACTCGCCATTACTCAGCTGTGTCTCCATGAAGAGTGATGTGTCTATGGATGTTCCTCTTAGATTCAAAGGGGGAAACCCCTCATCTGGTAACAGTGGAGAAAATATGTACAGCATTTCACTTTGGGTTGCCCACAGTGTCCTGCAGGGGGATGGAAACAGAAGGGAACAGAAGATCATCACAGATCCAGGTTGTGAATCTTCATCTGCTGAAACTGCAGTTCAGGAGAAATGCAAATTAATTCTGATGAAGAAGTTTCAGCATGTGAATGAGGTGATAACAAACCAGGGAAACCCAACACTTCtcaatgagatctacacagagctctacatcacagaagGAGACAGTGGAAAAgtgaataatgaacatgaggtgaaaCAGATCGAGGCAGCATCCAGGAGAGCAGCAACAGAGGAAACACCAATCAAATGCAGTGACATCTTTAAGCCCTTGCGTCAAAATGACTGTCCGATTTTTGCTGTTCTGACAAAGGGAGTCGCTGgcattggaaaaacagtctctgtgcagaaatTCATTCTAGACTGGGCTGAAGGGAAAACAAATCAGGACATTCATCTCATATTTCCACTTCCTTTCAGAGAGCTCAATTTGATGAAGGATCAAACACTAAGCCTGATGGAgctccttcatttcttttttaaggaAATTAAAGAAGCAGACATTTCCAGCTTGGAGAAAgttctgttcatttttgatGGTTTGGATGAGTGTCGTTTTCCTCTGGATTTCCAGAACACagtgagattgtgtgatgtaACTGAATCAGCATcggtggatgtgctgctgataAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACCTCCCGACCAGCAGCAGCTGATCAAATCCCCTCTGAGTGGTTTAATCGAGTCACAGAGGTACAAGGGTTCAATGACCCACAGAAGGAGGAATatttcaggaagaggatcagtgatcagagcctgagCAACAGAATCATCACACACCTGAAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatattggatgaagcagagagtggagagatccccaagactctgtctcaaatgtacacacacttcctcataaTTCAGACAAACATCATAAAGAAAAAGTACAcaaagagcagagagacagatgaagaaaTGGTTCTGAAACTGGGTCAATTGGCTTTTCAGCAGCTGATGAAAGgcaacctgatcttctatgaggaagacctgatggagtgtggcattgatgtgaCAGAAGCATCAGTGTATTcaggtgtgtgtacacagatcttcagagaggagtttgggcttcaccagAGTAAAGTGTACTGCTTTGTTCATCTGAGCATTCAGGAACACCTCGCAGCTCTATTTGTGCATCTGAAATtcttgaaagaaaagaaaaatgttcttCAGCAGAGTCTATTGTCTAAAATGTGGATGCTTCTAAGAGAAATTACAATGTTAGATGTACACAAGAGTGCTGTAGATCAGGCTTTACAGGATGAAAATGGACATCTGGACCTTTTCCTTCGCTTTCTTCTGGGTCTCTCCCTGGAGTCTAATCAGATCCACCTACAAACCATAGTGACACAGACAACAGGAAGTTTTCACAGCAACCAGGAAACAGTTTattacatcaaggagaagatcagagAGAATCCATCaacagagaaatccatcaatctgttccactgtctgtaTGAACTtgatgatcattctctagttgAGGAAATCCAACACTACCTGCAATCTGGAATTTTACAACAAATTGAACTTTCACCTTCTCAGTGGTCagctgtggtgtttgtgttactggcATCAGTGCAGGAGCAGGATGTGTTTGTTCTTAATAAATATACCAACAAACACTGTACATCAGATGAGGTTCTTCTGAAACTCCTGCCTGTGGTTGCAGCATCCAGAAAAGCTGAGTTTAATAATTGTGGCTTAAATGAGAAAAGTTGTGCAGCTTTGGCCTCAGTGCTCAGCTCTGAATCCTCCAAtttgagagaactggatctgtctaGAAATAAACTCAgagattcaggagtgaagcgtctctctgctggactggagaatcctcactgtaaactggagacactgaggttgtgtgattgtggtttctcagatgaaggctgtgatgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctgagaataaactcagagactcaggagtgaagcgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtgattgttgtgtCTCAGATggaggttgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaAGAATAAAAtcagagactcaggagtgaagcgtctctctgctgtactggagaatcttcactgtaaactggagacactgaggttgtgtgattgttgtgtctcagatgaaggctgtgatgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctgagaataaactcagagactcaggagtggagtgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtgattgtgatatctcagatgaaggctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaGGAATAACGtcagagactcaggagtgaagcgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtggTTGTGAtatctcagatgaaggctgtgctactctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctgAGAATGAActcagagactcaggagtgaagtgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtgtgattgtgatatctcagatgaaggctgtgatgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaagaataaactcagagactcaggagtgaagtgtctctctgctgtactggagaatcctcagtgtaaactggagacactgaggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399155 lncRNA upstream 11338 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA upstream 13261 2186573 ~ 2288884 (+) False LOC117595892
TU399149 lncRNA upstream 13261 2264520 ~ 2288884 (+) False LOC117595892
XR_004577082.1 lncRNA upstream 42609 2242185 ~ 2259536 (+) False LOC117595896
XR_004577081.1 lncRNA upstream 42609 2245940 ~ 2259536 (+) True LOC117595896
TU399240 lncRNA downstream 56842 2397103 ~ 2397302 (+) True G337052
TU399249 lncRNA downstream 110258 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 167299 2507560 ~ 2511667 (+) True G337066
TU399294 lncRNA downstream 243790 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 456842 2797103 ~ 2797348 (+) True G337113
XM_034298849.1 mRNA upstream 61722 2209792 ~ 2240423 (+) True LOC113546299
XM_026945946.2 mRNA upstream 138622 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 159123 2074883 ~ 2143022 (+) True rims2b
XM_026946068.2 mRNA upstream 236235 2059332 ~ 2065910 (+) True cthrc1a
XM_026946066.2 mRNA upstream 263098 2026407 ~ 2039047 (+) True mc5ra
XM_034298847.1 mRNA downstream 17867 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA downstream 17867 2358128 ~ 2388198 (+) False LOC113546300
XM_034298643.1 mRNA downstream 107955 2448216 ~ 2453296 (+) True LOC117595862
XM_026945970.2 mRNA downstream 201221 2541482 ~ 2551073 (+) True rdm1
XM_026946093.2 mRNA downstream 214396 2554657 ~ 2556829 (+) True ifnphi3
TU398943 other upstream 356279 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 642686 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 966615 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 974638 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 1166038 1132988 ~ 1136107 (+) False mllt11
TU399163 other downstream 17855 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 17867 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 17867 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 17867 2358128 ~ 2392375 (+) False LOC113546300
TU400576 other downstream 2012261 4352522 ~ 4355029 (+) True G338163

Expression Profile