RNA id: TU399240


Basic Information

Item Value
RNA id TU399240
length 200
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G337052
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2397103 ~ 2397302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTACTGCAGCACTGGCATCAGTGGTTGACACAAGATTCAGGTGATGGCATGCACACTTATGCCTTGGAAGGTGATACTCCAAGccattgttgttatttaaaatagaaCAGACATCCTAATACTCTAAGTCTTCTAAAGGACTTTCATCTTCTGGAGCATTTTCCTCAATTCTCACTGGTTTCTTCATCGCTCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399155 lncRNA upstream 106296 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA upstream 108219 2186573 ~ 2288884 (+) False LOC117595892
TU399149 lncRNA upstream 108219 2264520 ~ 2288884 (+) False LOC117595892
XR_004577082.1 lncRNA upstream 137567 2242185 ~ 2259536 (+) False LOC117595896
XR_004577081.1 lncRNA upstream 137567 2245940 ~ 2259536 (+) True LOC117595896
TU399249 lncRNA downstream 53217 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA downstream 110258 2507560 ~ 2511667 (+) True G337066
TU399294 lncRNA downstream 186749 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 399801 2797103 ~ 2797348 (+) True G337113
TU399341 lncRNA downstream 407206 2804508 ~ 2804746 (+) True G337117
XM_034298847.1 mRNA upstream 4566 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA upstream 8905 2358128 ~ 2388198 (+) False LOC113546300
XM_034298843.1 mRNA upstream 45354 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA upstream 56842 2302145 ~ 2340261 (+) True LOC113546301
XM_034298849.1 mRNA upstream 156680 2209792 ~ 2240423 (+) True LOC113546299
XM_034298643.1 mRNA downstream 50914 2448216 ~ 2453296 (+) True LOC117595862
XM_026945970.2 mRNA downstream 144180 2541482 ~ 2551073 (+) True rdm1
XM_026946093.2 mRNA downstream 157355 2554657 ~ 2556829 (+) True ifnphi3
XM_034298644.1 mRNA downstream 169390 2566692 ~ 2568040 (+) True LOC117595863
XM_034298394.1 mRNA downstream 210044 2607346 ~ 2660278 (+) True arhgap27l
XR_004577078.1 other upstream 4625 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 4631 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 4728 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 27027 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 75686 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1955220 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3942205 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 4207355 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 4313713 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5885658 8282960 ~ 8285204 (+) True G340208

Expression Profile