RNA id: TU399260


Basic Information

Item Value
RNA id TU399260
length 273
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G337066
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2507560 ~ 2511667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acctcagtgtctccagtttacagtgaggattctccagtacagcagagagacacttcactcctgagtctctgagtttattctcagacagatccagttctctcaggtgtgaggggtttgatctcagagctgaagtcagagcagcacagccttttTCTGATACACCACAatcacacaacctgcagagagacaatgacacactcttcactctctcagttcaggacacacagatCAGTTCAGCAGGAAATTTTTCATCAAAGAGTCTCTGCAGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399240 lncRNA upstream 110258 2397103 ~ 2397302 (+) True G337052
TU399149 lncRNA upstream 218676 2264520 ~ 2288884 (+) False LOC117595892
XR_004577082.1 lncRNA upstream 248024 2242185 ~ 2259536 (+) False LOC117595896
TU399294 lncRNA downstream 72384 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 285436 2797103 ~ 2797348 (+) True G337113
TU399341 lncRNA downstream 292841 2804508 ~ 2804746 (+) True G337117
TU399343 lncRNA downstream 309423 2821090 ~ 2821530 (+) True G337119
TU399350 lncRNA downstream 321921 2833588 ~ 2834059 (+) True G337126
XM_034298643.1 mRNA upstream 54264 2448216 ~ 2453296 (+) True LOC117595862
XM_034298847.1 mRNA upstream 115023 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA upstream 119362 2358128 ~ 2388198 (+) False LOC113546300
XM_034298843.1 mRNA upstream 155811 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA upstream 167299 2302145 ~ 2340261 (+) True LOC113546301
XM_026945970.2 mRNA downstream 29815 2541482 ~ 2551073 (+) True rdm1
XM_026946093.2 mRNA downstream 42990 2554657 ~ 2556829 (+) True ifnphi3
XM_034298644.1 mRNA downstream 55025 2566692 ~ 2568040 (+) True LOC117595863
XM_034298394.1 mRNA downstream 95679 2607346 ~ 2660278 (+) True arhgap27l
XM_034298396.1 mRNA downstream 95679 2607346 ~ 2660278 (+) False arhgap27l
XR_004577078.1 other upstream 115082 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 115088 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 115185 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 137484 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 186143 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1840855 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3827840 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 4092990 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 4199348 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5771293 8282960 ~ 8285204 (+) True G340208

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU606926 False 257 lncRNA 0.44 2 CI01000427 13524 ~ 37567 (+)