RNA id: TU399337


Basic Information

Item Value
RNA id TU399337
length 246
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G337113
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2797103 ~ 2797348 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGATGCTTCAGTTGTTCCACAGCCGAGAATCTGTCGGTGTCTCTGCAGGAGACGGAGGGGAAATGAACTCTCGCTTGGCTGGAGAGACCTCCCCACAGGCACGCTGATGATAGCCATCATCACGCCGACGCTCCTCTCAGGGACGGCAGCTTTAGATTTACTGCGCCTGATTTAATCGCGCCGCCATTCCCTCACATTCATTATCAAACAGCTGAACTCAGACGAGATGACTGCATACTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399294 lncRNA upstream 211307 2584051 ~ 2585796 (+) True G337075
TU399249 lncRNA upstream 245823 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA upstream 285436 2507560 ~ 2511667 (+) True G337066
TU399240 lncRNA upstream 399801 2397103 ~ 2397302 (+) True G337052
TU399149 lncRNA upstream 508219 2264520 ~ 2288884 (+) False LOC117595892
TU399341 lncRNA downstream 7160 2804508 ~ 2804746 (+) True G337117
TU399343 lncRNA downstream 23742 2821090 ~ 2821530 (+) True G337119
TU399350 lncRNA downstream 36240 2833588 ~ 2834059 (+) True G337126
TU399351 lncRNA downstream 36923 2834271 ~ 2834556 (+) True G337127
TU399352 lncRNA downstream 44008 2841356 ~ 2842455 (+) True G337128
XM_026946022.2 mRNA upstream 55509 2671258 ~ 2741594 (+) True wnk4b
XM_034298394.1 mRNA upstream 136825 2607346 ~ 2660278 (+) True arhgap27l
XM_034298396.1 mRNA upstream 136825 2607346 ~ 2660278 (+) False arhgap27l
XM_034298398.1 mRNA upstream 136825 2607346 ~ 2660278 (+) False arhgap27l
XM_034298395.1 mRNA upstream 136825 2607346 ~ 2660278 (+) False arhgap27l
XM_026946102.2 mRNA downstream 48059 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 197929 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 234300 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 244020 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 244020 3041368 ~ 3067972 (+) False vwa3a
XR_004577078.1 other upstream 404625 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 404631 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 404728 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 427027 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 475686 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1555174 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3542159 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3807309 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3913667 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5485612 8282960 ~ 8285204 (+) True G340208

Expression Profile