RNA id: TU399351


Basic Information

Item Value
RNA id TU399351
length 286
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G337127
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2834271 ~ 2834556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGTGGAACATATGCCACTGAGGCTGTTATCTGGGTAGTGTTCTCtacaatatttttaacatgGATCTAGCATTTTCAGATTTCAGTTCTTGATGTTTATGGCCATTAAAGTGCGAATCTTATCAAAGGGATGGTGGGTAAgttatttttgctgtaaaaGCAAAGGCAATGGAAAGCTTTCAGGTTCTATTGGGCACATCTTACAGCAATATTCATGCAGTCGTGTACTTACCGTCTCCAGAGACAACTGTGGCTGGTCTGAAAATGTTGATAAGCGAGGTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399350 lncRNA upstream 212 2833588 ~ 2834059 (+) True G337126
TU399343 lncRNA upstream 12741 2821090 ~ 2821530 (+) True G337119
TU399341 lncRNA upstream 29525 2804508 ~ 2804746 (+) True G337117
TU399337 lncRNA upstream 36923 2797103 ~ 2797348 (+) True G337113
TU399294 lncRNA upstream 248475 2584051 ~ 2585796 (+) True G337075
TU399352 lncRNA downstream 6800 2841356 ~ 2842455 (+) True G337128
TU399353 lncRNA downstream 8108 2842664 ~ 2842875 (+) True G337129
TU399360 lncRNA downstream 27971 2862527 ~ 2862968 (+) True G337136
TU399362 lncRNA downstream 36127 2870683 ~ 2870909 (+) True G337138
XR_003404701.2 lncRNA downstream 91968 2926524 ~ 2995271 (+) True LOC113546290
XM_026946022.2 mRNA upstream 92677 2671258 ~ 2741594 (+) True wnk4b
XM_034298396.1 mRNA upstream 173993 2607346 ~ 2660278 (+) False arhgap27l
XM_026946102.2 mRNA downstream 10851 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 160721 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 197092 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 206812 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 206812 3041368 ~ 3067972 (+) False vwa3a
XR_004577078.1 other upstream 441793 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 441799 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 441896 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 464195 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 512854 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1517966 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3504951 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3770101 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3876459 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5448404 8282960 ~ 8285204 (+) True G340208

Expression Profile