Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU405780 |
| length | 782 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 5 |
| gene id | G342538 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 12456707 ~ 12460218 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU405731 | lncRNA | upstream | 67932 | 12387784 ~ 12388775 (+) | True | G342496 |
| TU405730 | lncRNA | upstream | 68101 | 12387784 ~ 12388606 (+) | False | G342496 |
| TU405732 | lncRNA | upstream | 68343 | 12387784 ~ 12388364 (+) | False | G342496 |
| TU405533 | lncRNA | upstream | 180755 | 12275746 ~ 12275952 (+) | True | G342333 |
| TU405392 | lncRNA | upstream | 526650 | 11863246 ~ 11930057 (+) | True | G342208 |
| TU405788 | lncRNA | downstream | 14126 | 12474344 ~ 12476263 (+) | True | G342546 |
| TU405838 | lncRNA | downstream | 34824 | 12495042 ~ 12544734 (+) | True | G342589 |
| TU405841 | lncRNA | downstream | 37690 | 12497908 ~ 12498466 (+) | True | G342592 |
| TU405844 | lncRNA | downstream | 42603 | 12502821 ~ 12505195 (+) | True | G342595 |
| TU405899 | lncRNA | downstream | 96051 | 12556269 ~ 12556480 (+) | True | G342617 |
| XM_026930066.2 | mRNA | upstream | 850 | 12428895 ~ 12455857 (+) | True | pogza |
| XM_026930004.2 | mRNA | upstream | 69513 | 12382783 ~ 12387194 (+) | True | anp32e |
| XM_026930182.2 | mRNA | upstream | 109057 | 12340039 ~ 12347650 (+) | True | jtb |
| XM_034298802.1 | mRNA | upstream | 118409 | 12277882 ~ 12338298 (+) | False | LOC113536355 |
| XM_034298562.1 | mRNA | downstream | 2527 | 12462745 ~ 12472879 (+) | True | si:dkey-166k12.1 |
| XM_026929517.2 | mRNA | downstream | 2553 | 12462771 ~ 12472879 (+) | False | si:dkey-166k12.1 |
| XM_026929465.2 | mRNA | downstream | 47171 | 12507389 ~ 12513161 (+) | True | crtap |
| XM_026929603.2 | mRNA | downstream | 71087 | 12531305 ~ 12554353 (+) | True | fbxl2 |
| XM_034298517.1 | mRNA | downstream | 73034 | 12533252 ~ 12554353 (+) | False | fbxl2 |
| XR_004577055.1 | other | upstream | 641434 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405031 | other | upstream | 1162351 | 11292324 ~ 11294356 (+) | True | smim12 |
| TU405030 | other | upstream | 1162677 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU404551 | other | upstream | 1974737 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU403677 | other | upstream | 3227271 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU405918 | other | downstream | 231807 | 12692025 ~ 12695512 (+) | False | fabp3 |
| XR_003403671.2 | other | downstream | 325619 | 12785837 ~ 12792473 (+) | True | LOC113536228 |
| XR_004577016.1 | other | downstream | 444405 | 12904623 ~ 12951963 (+) | False | si:ch211-199g17.2 |
| TU406031 | other | downstream | 616952 | 13077170 ~ 13081229 (+) | True | G342718 |
| TU407134 | other | downstream | 1745518 | 14205736 ~ 14219690 (+) | False | slc30a8 |
