Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU405904 |
| length | 223 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G342621 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 12648495 ~ 12648717 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU405899 | lncRNA | upstream | 92015 | 12556269 ~ 12556480 (+) | True | G342617 |
| TU405838 | lncRNA | upstream | 103761 | 12495042 ~ 12544734 (+) | True | G342589 |
| TU405844 | lncRNA | upstream | 143300 | 12502821 ~ 12505195 (+) | True | G342595 |
| TU405841 | lncRNA | upstream | 150029 | 12497908 ~ 12498466 (+) | True | G342592 |
| TU405788 | lncRNA | upstream | 172232 | 12474344 ~ 12476263 (+) | True | G342546 |
| TU405912 | lncRNA | downstream | 26424 | 12675141 ~ 12675351 (+) | True | G342627 |
| TU405913 | lncRNA | downstream | 28131 | 12676848 ~ 12677197 (+) | True | G342628 |
| TU405914 | lncRNA | downstream | 30398 | 12679115 ~ 12679330 (+) | True | G342629 |
| XR_004577006.1 | lncRNA | downstream | 35416 | 12684133 ~ 12687213 (+) | True | LOC117595825 |
| TU406059 | lncRNA | downstream | 498328 | 13147045 ~ 13147846 (+) | True | G342735 |
| XM_026929705.2 | mRNA | upstream | 1235 | 12634750 ~ 12647260 (+) | True | pdcd6ip |
| XM_026929706.2 | mRNA | upstream | 1235 | 12634750 ~ 12647260 (+) | False | pdcd6ip |
| XM_026929919.2 | mRNA | upstream | 16543 | 12609500 ~ 12631952 (+) | True | ubp1 |
| XM_026929831.2 | mRNA | upstream | 42137 | 12556877 ~ 12606358 (+) | True | clasp2 |
| XM_034298716.1 | mRNA | upstream | 42137 | 12556877 ~ 12606358 (+) | False | clasp2 |
| XM_034298401.1 | mRNA | downstream | 1500 | 12650217 ~ 12665069 (+) | False | arpp21 |
| XM_026929426.2 | mRNA | downstream | 1501 | 12650218 ~ 12665069 (+) | False | arpp21 |
| XM_026929425.2 | mRNA | downstream | 1501 | 12650218 ~ 12665069 (+) | False | arpp21 |
| XM_026929424.2 | mRNA | downstream | 1503 | 12650220 ~ 12665069 (+) | True | arpp21 |
| XM_026929677.1 | mRNA | downstream | 43290 | 12692007 ~ 12695512 (+) | True | fabp3 |
| XR_004577055.1 | other | upstream | 833222 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405031 | other | upstream | 1354139 | 11292324 ~ 11294356 (+) | True | smim12 |
| TU405030 | other | upstream | 1354465 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU404551 | other | upstream | 2166525 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU403677 | other | upstream | 3419059 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU405918 | other | downstream | 43308 | 12692025 ~ 12695512 (+) | False | fabp3 |
| XR_003403671.2 | other | downstream | 137120 | 12785837 ~ 12792473 (+) | True | LOC113536228 |
| XR_004577016.1 | other | downstream | 255906 | 12904623 ~ 12951963 (+) | False | si:ch211-199g17.2 |
| TU406031 | other | downstream | 428453 | 13077170 ~ 13081229 (+) | True | G342718 |
| TU407134 | other | downstream | 1557019 | 14205736 ~ 14219690 (+) | False | slc30a8 |
