RNA id: XM_026929738.2


Basic Information

Item Value
RNA id XM_026929738.2
length 4440
RNA type mRNA
GC content 0.42
exon number 11
gene id si:dkeyp-120h9.1
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8737159 ~ 8750226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCATCTCCGCTCGCGCTGCTGTAGGGCGGGAGCGctttcatcatctctctctctctctctctctctcaatctcaatctctctcaccctctctctcacacacgcacacacacacacacacacacagtccgcGTGGCCACACATCCTATGTGAAGTTTCAGAAAACGAAGTGTTTTTACCTCAGGGGCTTTCTCTTGAAGGTAAGAGCTGACAAGCAGGACTTGTTCTGCTTCTCTTGCTAGCTGTGTGGCTGAGCTTGGACTTCAGGAGCTAGCTCATGTTCCTCTTACTAACGTGGCTGGGATGCTAAGCTTTAGCTACTACCGGCTAATTTGCGTGAACTGGTTCACGTTTCCATATGTCGACGGACTTAATGTGGTTTGGAGgtcatttagaaatgttttaaccCTGTTTACGATAGGTTTATAATGTGTAAACTGTATATtatgtggaggaagtgtgaaGATACAGGTAAGTGTAAAGATAAGTGTAAAGTACAGGAAGATTACTAAAGAGTTCACGTTAGCTAGTATGAAGATAGTCTGGTTTTGTTAGACGATCAGCGTACTTTCCGTCTTTTTAGCCGTGGActatagattagattagattggatGAGATAACATTTCCTTACGTTACATTAGACAGATAGATGATTTAGTTAGCTAAAATAATAAAGCCACTTCCTTCCGCATAGATCTACAGGTGTGCTGTGTACATATTAACTAAGTCAATCTGTCAGAAGACAGATGAAAGCTTTTGAAATAGAtcgaggaaagagagagaaaaaaggattGCTGGCAAGTTGACAAAATGTTGTAATGAATGATGTTATAAAGGTTGGTTGTATATAAACTCTGTTGGTACTGTAAAAGCTAATTATAAACTTAACGCAGTGAtgtggaagaaaagaaaaagccatATAAAGACCTCACTCACCCAGAGGAGCATCATTTAACTACATGATCACTTGCTTCCTTATCTGAACACACAGCTACATCCAAATGAACTAACTTATCTTTCTgattaaaaagggaaaaacgTGTGAACATTCAAGAGTAACCTATATTCAAATGCAACCACTTGATCAACCTCTTGAACAACCTGTCATGTAGTAAACAGGGATGGACATGAATGCATCTGATGGTGAGAACGTTAACTATTAAGATGTATGATGCTAAATTGGTGCTGCTATGCAGAGGTTCCAACATCTGCAGatttgaCCCAGTGACAACAGATGAGCTATAACTGAGACCCAAGCAATCCTGATTTTGTCGTCTGGCACCACCCCCTCAACTTTTTTCCCAACTCCGTCCTTTTCTGCTTCCTCTGTCCTCCACAGATTGTGTTCAGAGTGAAGTCATGGCTAAAGCAGCAGACACCGGTTCCACCAACTCCATGCGTCTGAAGCAGGAGATCTCACTGTTACATGGAGTCTGCCTAATTGTGGGCAATATGATCGGCTCGGGTATTTTCGTATCTCCAAAGGGTGTGCTGCAGTACACAGGCTCCTTCGGGTTCTCACTGGTGGTGTGGGCTATCGGTGGCATCTTCTCTGTGTTTGGTGCCCTCTGTTATGCTGAACTCGGCACCACGATCCGTAAATCAGGTGCCAGCTATGCCTACATCCTCGAGGCTTTTGGTGGCTTCCTGGCGTTTATTCGTCTGTGGACTTCACTGCTGATCGTGGAGCCAGCATGCCAGGCAGTCATTGCTCTTACTTTCTCCAACTACCTGGTGCAGCCTTTCTACCCGACCTGCACAGCTCCATATGATGCCGTGCGGCTCATCGCAGCTCTCATCATTGCTCTGCTGACTTTTGTGAACTGTATGAAGGTGAAGTGGGGGGCTATCCTGCAGGTCATCTCTACTGTTGCAAAAGTGCTGGCTctcattgtcatcatcattgCTGGTTTGGTCATCCTGGCCCAAGGTAAGACAAAGAACTTTGAAGACTCTTTTAAGGACTCTAATCTGAATCCTGGAGACATGGCATTGGCTCTGTACGCTGCTCTGTATTCATACTCTGGCTGGGACACTCTGAACTTCATTACTGAGGAGATCAAAAACCCAGAGAGAAACTTGCCACTGTCTATAGCCATCTCCATGCCCATTGTCACGGTTATCTACCTCCTGACCAACGTGGCCTATTACGCAGTCATGGATGCAGAGACTGTGCTGCAGAGTGAAGCAGTGGCTGTGACGTTTGCTGACAGTGTTCTTGGCTATGGACGCTGGCTGATCCCCCTGTCTGTGGCCATCTCCTGCTATGGCGGTCTCAACTCCTCCATCATTGCTGCCTCCAGgcTGTTCTTTGTAGGATCTCGGGAGGGTCATTTACCCAACGTTCTGTCCATGATCCATGTGAAGCGCTATACACCAATCCCAGCCTTGCTGTTCAACGGTGGCATGAGCTTGCTTTACCTGTTTGTTCGAGATGTATTCCAACTTATtaattatttcagctttaattactGGCTGTTCATTGGCCTATCCATTGCCAGTCAGATCTACCTGCGCATAAAGGCTCCTGACATGCCTCGTCCTGTAAAGcttagCCTGTTCTTCCCCATAGTGTACTGCTTGTGTAGCGTGTTTCTGGTGGTGGTGCCGCTCTACAGTGACACTATAAACTCTCTGGTGGGCATCGGGGTGGCTCTCTCCGGCGCGCCAGTCTACTACCTCTTTGTGTACCTGCCTCCCAGCTCCAGACCTGCCTTCTTGGGAAGAATGTTCGATAAGATCTTGCTGTTCACCCAGAAGTTGTGTTTCTGCTGTGTAGCAGATCCAGGCCTTGACCTCGACAATCCAACTGAAGTGGGCAAATCGAAATGACCATGAACTGGAATTTTAAccagaattacttttttttattttttttaaatcttttttttttatatttaatatattttggttTTATAATGCAAGGTAGATTATGTCAGTTCAAGTCTGTATATTTGGATCAGAGCATGAGAATATGGACTCGGAGGTGTTAATATAATACGAGTTAATTCGcacaacatgtacacacacacacataatggaTTTGCTGTAGCATTTCTGATTTTTGACCCCTTGTTACAATGATAGGAGAGAGACCTGAAAATGAGGCTTTGCTGCTTTTTTCAGATAATACAATGGTACATCAGTTAgaccaaatgaataaaatgtgctCATTAGAATAACCAGTTAACTGAAGCAGAACGGATGTGAAAGACATCATTTGCTTCTGGAAATACTTTTACTTCATGCCAACTTTATCTAGGAGAACTTTACCTCGTGTATTCACGAGCCTTGGTCTTTTGGGAAAGAAAGTGGCCAAGTGGGCAGGACTGTGGTCTCTCTGGTCAGTAAAAAATGGAGCTGCTTATTAAGTAGCACTTAGACCAGACTTTTGCCTTACTCTTTGTATATGGCTGCTTGGTGCACACTGAAAAAGAATAGCTTTAGTCAATATTTTTGTCAGTGACACAGGaattttgtggtaaaattctatTCTTTTTGTTCgtctaggattttcttgttaataATGTTGGcttgtatgtctgtgtgtgtgttttgtaatgtAGTCTTTGATCTAATGTGTGCTAGCCTCGGAAAAACACTGGCACACGTAAATGAAGGATTATATTTGATTGACGTCCAGACAGGAGGGCCCCGAAGGGCCCTTTTTCCCCTTACACTGAGTTATATATCCACCAagcagtcattttatttttcaggaataattaagcagtttatttatttttcactgtggCCTTATAGGCCCGTATACATAGAGTTTTTTCCAATATTTGctagatttgttttattatatatattattacattgcTTTAAAAGTTTGGTTTTTTGGTCTAGAttatgtggattatttttcttatatatattattacattgctttaaaagttttttttttttttttggtctagattatgtggattatttttcatgtCTTGTGACCTTTTATAGACAGACAACCTATGCATAAAATGGAAAATTGCCTATTTCCATAGCATTTTAGTAAGAATAGTCCCTCCAGTCCTTGTTTAcatcagaaacattttcttttagatGTTCAAGCAGTTTCATGCTAAAATAATTCCACTGTACATGTGTCTGTGGGAAAAAGTACAGTAATAGTGTCATATTATTGTTCTCATGAACTGCCTTCTAAGAAAGGGGCAGAGCTGAGCACACCTGTTCTAGCTCAGGGCACAGTTTATGTCCAGGCcggaaaaatacacacagataccTGAAGTTAAGAAACTAGAAATATCTGATGCAACatttcaaatcacagattttgtGAGGTAACTTTAACATATTCTGATTATTATATGTCTATCACTTTATGGCACAAGGACACATTAATAGCTCTTTTAGTGCTGGATTTCAGGACACAGCAGTCTACTCTCAGGCTAAATCACAAGCTGTTTTATTATT

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K03294 TC.APA; basic amino acid/polyamine antiporter, APA family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403206 lncRNA upstream 68378 8668579 ~ 8668782 (+) True G340297
TU403162 lncRNA upstream 120119 8613486 ~ 8617041 (+) True G340257
TU403151 lncRNA upstream 245246 8489679 ~ 8491914 (+) True G340248
TU403089 lncRNA upstream 325802 8399218 ~ 8411358 (+) True G340197
TU403071 lncRNA upstream 478456 8257791 ~ 8258704 (+) False LOC113536074
TU403267 lncRNA downstream 94048 8844274 ~ 8845684 (+) True G340336
TU403270 lncRNA downstream 100742 8850968 ~ 8859663 (+) True G340339
XR_004577075.1 lncRNA downstream 125731 8875957 ~ 8891060 (+) False LOC117595890
XR_004577073.1 lncRNA downstream 126725 8876951 ~ 8891060 (+) False LOC117595890
XR_004577074.1 lncRNA downstream 130082 8880308 ~ 8891060 (+) True LOC117595890
XM_026930092.2 mRNA upstream 18590 8714493 ~ 8718570 (+) True hey1
XM_026930237.2 mRNA upstream 76569 8645520 ~ 8660591 (+) True zbtb10
XM_026929698.2 mRNA upstream 125708 8551057 ~ 8611452 (+) True znf704
XM_026929697.2 mRNA upstream 125708 8551063 ~ 8611452 (+) False znf704
XM_026929703.2 mRNA upstream 190791 8511684 ~ 8546369 (+) False pag1
XM_026929828.2 mRNA downstream 17770 8767996 ~ 8814969 (+) True ripor2
XM_026929829.2 mRNA downstream 17770 8767996 ~ 8814969 (+) False ripor2
XM_026929830.2 mRNA downstream 27987 8778213 ~ 8814969 (+) False ripor2
XM_034298508.1 mRNA downstream 28461 8778687 ~ 8814969 (+) False ripor2
XM_026929643.2 mRNA downstream 70158 8820384 ~ 8824825 (+) True c23h6orf62
TU403100 other upstream 451956 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2020014 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2121288 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 2393289 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 4382131 4352522 ~ 4355029 (+) True G338163
TU403493 other downstream 162702 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 162747 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 474414 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1724257 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2542098 11292324 ~ 11294030 (+) False smim12

Expression Profile