RNA id: XM_026930237.2


Basic Information

Item Value
RNA id XM_026930237.2
length 3123
RNA type mRNA
GC content 0.51
exon number 4
gene id zbtb10
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8645520 ~ 8660591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCACTCCAGCCGAGATGCATTGTGGGGAAAGTCGTTGCCATTCGACCTCTGCAGGGCCTGCGCGGACGCAGCCAGAACCCTGAAATTCATTATGCCTTTAAAACCCCTATTTATTTCCGCATAACCTACATACTCTCGCCAGGAGGCCAAAGCGAAAAAAACGATCATTTCGATGCGGGGTATTTATTTCTAAACAACAACAGAATTAATCGGGAGCGGTTAGGAAAGATAATTCTTTAAGGAAAAGAAGTAGATTGTAATTTATTAGGAAAAACATGTCTGGAGAGCGAAACCGCAGGTCGCTGGCTTTTCGAGGAGGTGGATTAGCCGCGACCGGCTCCAGTGGCGTCCGAGGCAGCAACGGCGATAGCTGCGAGGCCCAGGCCTGGACCGACCGACACTTAAACGGCAACAGGCCGGATCAGGACGAAGACAGGGATCTGGGGGCAAAGAAAGGACCATCGCCCGGGCAAGTGGAGGGCGGGGGGTCGGTCAGCGACAGCACAGAACCGGaggctgaggaggaggaagaccCGGAAGGGAGCAAGCGGACGGCCGACAGAGACGCTGTCAGCAACCGCGGCTGGACCGCTGTGACGCCCGGAGAAAGGGCCGAGAGCAGCTGGACCACCGGGAACGGAATGAACGGGGACGACGGAGCGGCAGGATCAGAGGACGAGCGAGGCGCGGCGCTGCGCGGCGGAGACGCCAGAAAGCCCTGGGTTGAGATGAGACCTCAGACGCTGCTTCAGAAACACTCGCTTTTCCAAGCCTCCTGGCTACAGGAGTTTCCGTGGCTAAAATTTTGTCAAGAAACGGGACTCATGTCTTGTTCGTGGTGTCACAACATCGCCACCAACAACAGCGACGAGCTGGTGAAAGGCAGCCGGAATTATAAGCGCGCCCTGCTGCTGAGACATCACCTGTCCTCCGAGCACGGCCGGAACGACCCGACCAAACAGGAACCCGAGAGGCTAGAAGACACAGAGGGCACTGAGGTGGAGGACTACAGAAACAAGCCAAATGAGAACTCCTACTGCTACCAGCTGCTCCAGGAGCTGGACAAGCAGCGCAAGAGTGGCATTCTGTGTGACGTGAGCATTGTGGTTTGCGGTCAGGTCTTCCGCGCACACAAGAACATCTTGGTGGCAGGTAGCCGCTATTTCAAGACCCTCTACTGCTTGACCAAGAATGAGAACCTTGACCAGACCACAGTCACACATCTAGATGTCGCTGCCGTGCAGGGTTTCTCAGTCATCCTGGATTTCCTGTACTCAGGCAACTTACTGCTCACAAGCCAGAACGCCATTGAGGTGATGTCAGTGGCCAGCTACTTGCAGATGAGTGAGGTTGTGCAGTCATGCCGTGCTTTTATCAAAGATGCTCTGAACATCAGCATCAAGCAGGAAGCACCTGACTCAGTGCTAGTGGACTACAACAAGCGGCGTGCTGTGCCCAAAGATGACAAGAAGCCCGGCAATTTCTGGGCCACCAGCATCCTGTCCAAGCTGTCGATTAAGGCCAGCGGGCAGGTGAAGGAGGAGCCGAGTGACGCGGCTGTGCCAACGCTGGGTGCCTCAGCCTGGGGTGGAGAAAACTCTGTGGAGTCCGGGGAGATGCAGACACAGGGATCAGCTCCTGTGTTCGTCTGGAACGAGCTGCCCCCGGGTACTGGCGCGGCCATGAAGAGCGAGGAGCGCCACGAGCCAGGCAGTGGCAGGCGGAAAAAACAGATTGCCAGACGCTTTGTCTACAACATCCCACCTGAGCCAGAGGAGGGCTTTGATGAGGGCATGTTCATTCAGCCGTCAGCATCCTACACTAGAGATGACTACTCTTATCTCTCAGAGAAAACAGGTGAAACGTCCGACACCGCTCTGAATAAGCTCAAGTGTCCCCACTGTAACTACATAGCCAAGCACCGACGAACACTAAAGCGCCATCTGATCATCCACTCGGGCGTGCGATCCTTCAGCTGCGACATCTGCGGCAAGCTCTTCACCCGCCGAGAGCACGTCAAGAGACATTCCCTGGTGCACAAGAAAGATAAGAAGTACAAGTGCATGGTGTGTAAGAAGATCTTCATGCTGGCAGCCAGTGTGGGGATCCGTCATGGCTCTCGCCGctacggtgtgtgtgtggactgtgcTGACTCGCACCAGGCCACACAGGAAGGGCTGGAGGCCATGCAGGAGCTGGAGTTCAGCCGCGATGAAGACTTCGAGGAGAATGCCGAGGGAGACGAGGACATGGGGGAGGAGGCAGACGCCGAGGAGCCCAACGACAACGACCAATCCAACTACGAGGGTGACACAGGTGCCACTCCCGAGGAGGACTAACGTCAATgcaacttcaaaaaaaaaaaaaaaaaaagctgggaAACAATCAACAACTCCAAAGTGCTATCAAACCTCACGGTTGCACAGTAGTGTGTATgtccaaaagaaaaaagcatttgGTAGATAGGGACTCGAAGATGTAAAGATTATGTGTGTGACAGAGTCTAGGCCTGCTGCCTGttagagaaagagataaaatgatgatatatgaaaatCAGGTTTTTcagtgatgtatttttttcttcttctttactaGGGTCtgatggtgtacagtgttttaaGTTACGATAGGCCAATCATCTTAaagatattatttaatttatgaagAAAGTTAATATGGTCttattaaaatgctataatttgtgttttttttttttttttttccgcgtCTGATGAGAGAGGTTCCGTTTTAGGCTGCACTTCCTGGCAAGTCTGAACTTCCATGACTTATGACTGTCCTGACTTTAAAGACAGCATTGAAGATGTTGCCTACAGGaagattttatttcctttcaagTTGTGTAGATATGTTTAGTTATCATAAAAGATCTACGAGCtatatttccttttctttttttcctgcacaAATCTTGGaaccaaaaaaatctgttttgtgaCTCTAATAGACCACAGCCATATTTATGATTAAGTTATATTGGGGCTGTGCCATTGTGCCAAGCAGAACGCACACCGAGATTTGGCAGGAGGCGAACTACTGAAAATGCTGAGAGTAAacataaagcagaaaaaaaaagttacaaaaaaaaaaaaaaaaagtataa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10497 ZBTB10, RINZF; zinc finger and BTB domain-containing protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403162 lncRNA upstream 28479 8613486 ~ 8617041 (+) True G340257
TU403151 lncRNA upstream 153606 8489679 ~ 8491914 (+) True G340248
TU403089 lncRNA upstream 234162 8399218 ~ 8411358 (+) True G340197
TU403071 lncRNA upstream 386816 8257791 ~ 8258704 (+) False LOC113536074
TU403010 lncRNA upstream 407568 8233867 ~ 8237952 (+) True G340146
TU403206 lncRNA downstream 7988 8668579 ~ 8668782 (+) True G340297
TU403267 lncRNA downstream 183683 8844274 ~ 8845684 (+) True G340336
TU403270 lncRNA downstream 190377 8850968 ~ 8859663 (+) True G340339
XR_004577075.1 lncRNA downstream 215366 8875957 ~ 8891060 (+) False LOC117595890
XR_004577073.1 lncRNA downstream 216360 8876951 ~ 8891060 (+) False LOC117595890
XM_026929698.2 mRNA upstream 34068 8551057 ~ 8611452 (+) True znf704
XM_026929697.2 mRNA upstream 34068 8551063 ~ 8611452 (+) False znf704
XM_026929699.2 mRNA upstream 99151 8499796 ~ 8546369 (+) True pag1
XM_026930092.2 mRNA downstream 53902 8714493 ~ 8718570 (+) True hey1
XM_034298594.1 mRNA downstream 76568 8737159 ~ 8750226 (+) False si:dkeyp-120h9.1
XM_026929738.2 mRNA downstream 76569 8737160 ~ 8750226 (+) True si:dkeyp-120h9.1
XM_026929740.2 mRNA downstream 76569 8737160 ~ 8750226 (+) False si:dkeyp-120h9.1
XM_026929741.2 mRNA downstream 76569 8737160 ~ 8750226 (+) False si:dkeyp-120h9.1
TU403100 other upstream 360316 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 1928374 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2029648 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 2301649 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 4290491 4352522 ~ 4355029 (+) True G338163
TU403493 other downstream 252337 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 252382 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 564049 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1813892 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2631733 11292324 ~ 11294030 (+) False smim12

Expression Profile