RNA id: XM_026930076.2


Basic Information

Item Value
RNA id XM_026930076.2
length 2230
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC113536236
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11798056 ~ 11806421 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAGGCTTTTCTTCCATGGCTACAGTGTTATAAATTGAGGGCTTCTGTATATCTCTCGTTACCTTACCGTGAATGAATAAAGGTGTTTTAAAGGGAAAATACAGGCAAATTCGTATTagtaacaattaaaaaaacatagcaattaacattaaaatgacaaCTCAAGAGAACACAGCTAAAACGAAGAGAGGTGATTTAACATCTGCTGAAAGAGAGATGCTACAGGTTGCTGCTGCAGGGGATGTGCAAGAGGCTGCTCGGCTTCTCAACAGTAAAGAAGTGCGGGTTAACTGTCTGGATGAGAATGGCATGACCCCTCTCATGCATGCTGCTTATAAGGGGCAAGCAGACGTATGCAGGCTATTGCTGCAGCATGGAGCTGATGTCAACTGTAATGAGCATGAGTATGGCTATACTGCTCTCATGTTCGCCAGCCTCTCAGGCAATGCTGAGATTACATGGATGATGCTGGACGCTGGGGCAGAGACAGACCTGGTCAACTCCGTGGGACGGACCGCAGCCCAAATGGCAGCTTTTGTAGGCCAGCATGACTGTGTGACAGTGATCAATAACTTCTTCTCACGAACAAGATTAGAATACTACACCAGGCCGCAGGGCTTAGAGAAAGAACCCATACTACCTCCAAAACTGGCAGGACCTTTACATAAAATCATCATGACCACCAACCTCAACCCAGTCAAGatggtgatgatggtgaaaGAAAACCCGCTCCTGGTAGACGTCGTAGCTCTAGAGAAGTGTTACCGAGTGATGGATCTgctgtgtgagcagtgtgtgaagCAGCAGGACATGAATGAGGTGCTGGCTATGAAGATGCACTACATCAGCTGTGTGCTACAAAAGTGCCTGGCCTTCCTACAGGAGCGTGATGACAAACTAGACGCTCTCCTCAAGAGtcttttaaaAGGGCGAGATGGTGATGGCTTTCCTCAGTACCAGGAGAAATTTATTCGTGACTGTATCCGGAAGTTTCCTTACTGTGAGGCGACTCTGTTGCACCAGTTGGTCCAAAACATAGCTCCAGTGGAAAATGGGAACTCCCCAACAGCCTTCTCAGTTCTTACTCAGGCATTAACGGGTCAGACGGCTCTAATGGATGCTGAGTTTTGTGCTACATGCGGAGAGAGGGGAGCTGATAAGAAGTGTTCGTTCTGCGAAATGGTTGTCTACTGTGGGCAGGCTTGTCAGAGGCTGCACTGGTTCACACATAAGAAAGTATGTAAGGCCTTGCAGCGACAGCGAGAATTTCAGAGTAAAGATTCTCCTAGTGTGAGAGAAATCCCTGGAAATGATGATGGTCATGATGCTATTGAGGGAAATTGCAGCTCATTGCTGGGTCTCTGTTTGGGATTTGCGGAGCTTGGACGTTCACATTCTTTTTGTGAGAACTACCCTGACCCTTCGAATGCTGTTGCAGAGGCCATGTCTGGCTGCCAGGACTGGGGAAGAGAGGACCATCCATCTTCCTGACTATTAAAGCTCTGCTTATTCACCATACATTTTAACTGGGCAGAACATTACACAACCaaaaccctttctgatagggaaacactcagttctacatagaacccaGAGTGATAACCAAAGACCCATTAGACcctgcactcttagaaaaaaaaaagatattcagGGTTTTTGGGCTTTTTACCACTTCTAGCATCCTAAAGGTATTCTACTTGAAATCATCTCTAAAAGGGGAAACGCTCTATTGTAGGTCTCTACATAGAaactttaagggttcttaaAGTACCTTTTAGGATGATAGATACAGGGTGTGTGCACTACCAATCAAAATGTTTGGACACACTagattaaatgtataattttcatTGTCTTAAAGGCATTTTGATAAAAGCTTATGGTTGAAATTTGTTTATGGACAACTgtagtgaaaaaataaaatatcatgttATACTATAGTGTTAATTTTCTAATATAGTAGAAATATGAAGAAAAGCCTTCTATGAGAAGGTGTGTCCAAAGTTTTGACTGGTAGTGTGCTTCTGCACTGGCATAAGGGCTCATGTATATACTAAATTTGAAGAACAACTCTGACTGATGGTGGATTATTTCTTATTACAGATCAGTACTGATTGgtatttttcttcctcttatacctctaGATTGAACCATTtgaacaaattcatttttattttttgtttttaaaaatttcctgTCTTGTAACTCCatcaagttatttttttttca

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24633 ANKMY2, ZMYND20, DAF25; ankyrin repeat and MYND domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405369 lncRNA upstream 261 11787073 ~ 11797795 (+) False G342189
TU405370 lncRNA upstream 5414 11787746 ~ 11792642 (+) True G342189
TU405371 lncRNA upstream 13076 11782266 ~ 11784980 (+) True G342190
TU405239 lncRNA upstream 208831 11589018 ~ 11589225 (+) True G342079
TU405227 lncRNA upstream 214201 11583642 ~ 11583855 (+) True G342067
TU405392 lncRNA downstream 56825 11863246 ~ 11930057 (+) True G342208
TU405533 lncRNA downstream 469325 12275746 ~ 12275952 (+) True G342333
TU405730 lncRNA downstream 581363 12387784 ~ 12388606 (+) False G342496
TU405731 lncRNA downstream 581363 12387784 ~ 12388775 (+) True G342496
TU405732 lncRNA downstream 581363 12387784 ~ 12388364 (+) False G342496
XM_026929909.2 mRNA upstream 24493 11768970 ~ 11773563 (+) True sync
XM_026929625.2 mRNA upstream 82235 11706658 ~ 11715821 (+) True yars1
XM_026929626.2 mRNA upstream 92939 11690437 ~ 11705117 (+) True mfsd2ab
XM_026929711.2 mRNA upstream 228113 11541503 ~ 11569943 (+) True fam49al
XM_034298526.1 mRNA upstream 324733 11447142 ~ 11473323 (+) True dlgap3
XM_026930095.2 mRNA downstream 3688 11810109 ~ 11815273 (+) True sostdc1b
XM_026930030.2 mRNA downstream 26169 11832590 ~ 11841066 (+) True meox2b
XM_034298654.1 mRNA downstream 62794 11869215 ~ 11871010 (+) True LOC117595868
XM_034298362.1 mRNA downstream 140929 11947350 ~ 11968642 (+) True si:ch211-57n23.4
XM_034298487.1 mRNA downstream 217473 12023894 ~ 12063869 (+) True gatad2b
TU405031 other upstream 503700 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 504026 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 1316086 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2568620 9224640 ~ 9229436 (+) False bet1
TU403492 other upstream 2882212 8912973 ~ 8915844 (+) False sem1
XR_004577055.1 other downstream 3688 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 885604 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 979416 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1098202 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1270749 13077170 ~ 13081229 (+) True G342718

Expression Profile