RNA id: XM_026930145.2


Basic Information

Item Value
RNA id XM_026930145.2
length 3626
RNA type mRNA
GC content 0.43
exon number 13
gene id yrk
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12819104 ~ 12836295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGCGCGCAGACTTCAGCCCTTCCGGACACAGCGCGAGCGCGTCTGCGGTCAGAGCCGGCGACTTTTCTTGAGTCGAAAAGAGGAATAGCGAATTGACGCCGCTTCTGTGCGTCGGGGTCAGAAAGTTCGTCCAGgGAGATGGTGTGGATGAACAGATGATTTGATAATCTGGTCTGCTTTCTTGTCTCTTGGGCAGAAGCTCTGTTTCCAGGGTAATGAGCGATATTCAAAAATCTTGTGACAATCAAGATTAGTATGGGCTGTGCTTGCTGTAAGCAGAGGAAGGCCTCCAAAGTGTCCACTGTGTCGTATGGTGACACATGTGACGCAGGATGTGGGGCTCAGGTGACGGACAGCTCGCGTTACATTCCAGACCCCACCCACAACTCAGGGGCCGGTCTCATCCCAAACTTCAATGATTTCCCCAGCACAATATCTAGCTCCAGCGCTTTTCCAGCATCCAGCTTCCCCTCCAACCCTAGCCAACCACGGTCTACTGCCATCACAGGAGGAGGGGTGACACTGTTTATAGCGCTGTATGAGTATGATGCCCGGACAGAAGATGACCTGAGTTTCCAGAAGGGAGAAAAGTTCCACATTATCAATAACACCGAAGGTGATTGGTGGGAAGCACGCTCTCTGGACACAGGGAAATCTGGATACATTCCCAGTAACTATGTGGCCCCTGTGGATTCCATACAGGCTGAGGAgTGGTATTTTGGAAAGATGGGCCGTAAGGATGCAGAACGGCAACTCTTGGGCCAGAACAACCCAAGAGGGACCTTCTTAataagagagagtgagactaCTAAAGGAGCATACTCTCTGTCTATCAGAGACTGGGATGAGGCAAAGGGCGACCATGTAAAGCATTATAAAATCAGGAAGCTTGATAATGGGGGATATTACATCACAACCCGAAGCCAGTTTGAAACTGTTCAGCAACTGGTGCAACATTATTCAGATCGTGCAGCAGGGCTTTGCTGCCGTTTGATGGGCAGCTGTAGGCGGGGTATGCCTAAACTAGCTGACCTGTCAGTGAAGACTAAGGATGTTTGGGAGATACCAAGGGAGTCACTTCAGCTAATTAAGAAACTGGGCAACGGGCAATTTGGTGAAGTGTGGATGGGGATGTGGAATGGCACTACTAAAGTGGCAGTGAAGACTCTGAAGCCAGGCACCATGTCTCCAGAGGCCTTCCTAGATGAGGCCCAGATCATGAAGAGACTCCGCCATGATAAACTGGTGCAGCTGTATGCTGTGGTGTCAGAAGAACCAATCTACATCATCACAGAGTTCATGAGTCAAGgaAGCCTGTTAGACTTCCTCAAAGATGGAGAAGGCAGAAATCTGAAGCTGCCTCAACTTGTGGACATGGCTGCACAGATTGCAGCTGGGATGGCGTACATTGAGAGGATGAACTACATCCACAGAGACCTGAGAGCTGCCAACATCCTGGTGGGAGATAGCTTGGTCTGTAAGATTGCCGACTTTGGGTTGGCCAGACTCATCGAAGACAATGAATACACCGCCAGACAAGGAGCAAAATTTCCGATAAAGTGGACTGCCCCAGAGGCAGCACTCTACGGCAAATTTACCATTAAATCAGATGTGTGGTCATTTGGCATCCTACTGACTGAACTCATTACAAAGGGCAGAGTGCCATACCCAGGGATGAATAACAGGGAGGTCCTGGAGCAAGTGGAACGCGGTTATCGTATGCCATGTCCACAGGGCTGTCCAGCCTCTCTGCACGATTTAATGCTGCAGTGTTGGAGGAAGGACCCAGACGAGCGCCACACCTTCGAGTACCTGCAGGGCTTCCTGGAGGACTACTTCACTGCCACTGAACCACAGTACCAGCCGGGAGAGGACCTGTGATCCAAGCACGTGTAAAGTGATTTGACTGCTTTGACTTCCAGTGCTTTTAATGGGTTTTAAAAGGGATTTCCAAGTGAAGTCCTCATACTAAGTCTTCAAGTGAATGTATGTAGGATGACGTGCAAACCTTCTTCATAGAAAATCTTTACTTCAAAGTAAAGTAATTTTAAAGCAAAGAAGCAATTTCTCCTGAAGTATTACATTAACAGCAATGACACATTTAAAAGCATATGAATACTATGTAACCTGAATTTGCACGGTGTTACTGTAATAAGGTTTCAATTAGCAAAGAAATCAGACAGGACATTTTTACAGGACTTTGCACAGTCACAAGTACGTTTTGACCACAGTAGGCCTATAGGCCGGAACAAACAAACTATAGGGACATATCTTTATAATGTCTTAATCATTTCTttaaactgtgattttttttatcagatattttattactttttcttTAACCTTCTTATCTTTAAGCTATATGATTTTCATAGCTTTAACAGCAGGGGTGAGTGTAGTCCCTGAATTAGCACTGCTGTACTCTGCTGAAGCTTTGTGTCTGGTCTTGAGTCAGCATTGACATGTTGTTAAGGTGTAGCGGTTGTTCAGTAGGTCAGACTCAACAGCCCTAACATCTGCTTTAGAAGGGAactatttatagtatttttatgtcacaatataccactgattaaaaaaattaataagtgCCTATCAAACTGGTGCCTTCAAGTACTGTCAGAGTTTTGTGTTTGGATTTCTCCAGTCTTTATTATTGACAGATTCTTAGAGcatgttgtgtattttgtatgCAGTTTCACTTCAACAACCTGCTCAACATGTTTGTGTCTGAAGACTCCATTTATCTTACATGcatacacagacagagagagagagagagagagagagagagagagagagacagagagaagcaatgtttatttataatttctcaAGAATTATTGGCATCTCTGGATGGGAAGGTAAGATGTGGTAGATAGTACAAGTGAAAAAAGATCTTCACCAATAAACATTTCTCTACAGAATATTTGCTTTGTAATTATTGGATTGTCCAGATCTTACGTATAATTTTACAGGTCATTTTAAGCTCAGACAGGCATatattacttcctgtttcatgtGGCTACATAGGCAATATATGCCAAACATCCAaattaaataagacaaaaaatgatgCTGTTTAAGAATTTGGGAATTTCTAGCGAGGTTTTGTACATAGCATTACCTACATTTACATCTCTACACCAATACTAAGAAGTTAGAACAGTTGGGGATGTGATAAAACTGTGCACAATGAGGAAAATGCTTAGagtgtaaaaagaaaatcacagcaGTAGAAAAAAAGAGGTATTGTAGTCACTAATAGTCTaagattaattataaaatgacaTGTCAATGCTAATAAAATAGCTGATAGGCTGTGATCGcagtcctgtcctgtcctgtcagaactacaaataaagaatctggaaaatacaatatattgttttttgGAACTTTGTTTTTGAACTGGTCAGCTGAGAGCAAAACAGTCACAAACAGAACATGTTGGTTTGCCATAGGAGGATGCATCATCATTTGGAAAACAACCTTGACACGAATGGTATTAGGGATTCTTATGGGTCTCAGTATGTTATACAGCAAAAAATGTATACCTCtgttaaaatacaaacacagaatCTTCTAGTAATGCCTCATATACCAAACAAACAGTCAAGGTTGTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577006.1 lncRNA upstream 131891 12684133 ~ 12687213 (+) True LOC117595825
TU405914 lncRNA upstream 139774 12679115 ~ 12679330 (+) True G342629
TU405913 lncRNA upstream 141907 12676848 ~ 12677197 (+) True G342628
TU405912 lncRNA upstream 143753 12675141 ~ 12675351 (+) True G342627
TU405904 lncRNA upstream 170387 12648495 ~ 12648717 (+) True G342621
TU406059 lncRNA downstream 310750 13147045 ~ 13147846 (+) True G342735
TU406167 lncRNA downstream 465244 13301539 ~ 13301803 (+) True G342836
TU406909 lncRNA downstream 926789 13763084 ~ 13766601 (+) True G343522
TU407024 lncRNA downstream 1132939 13969234 ~ 13994319 (+) True G343620
TU407094 lncRNA downstream 1240162 14076457 ~ 14078541 (+) True G343671
XM_026929886.2 mRNA upstream 3872 12806146 ~ 12815232 (+) True sesn2
XM_026929885.2 mRNA upstream 14946 12798412 ~ 12804158 (+) True matn1
XM_026930069.2 mRNA upstream 21314 12793195 ~ 12797790 (+) True LOC113536229
XM_026930068.2 mRNA upstream 26631 12785837 ~ 12792473 (+) False LOC113536228
XM_026929877.2 mRNA upstream 34677 12751529 ~ 12784427 (+) True sdc3
XM_034298317.1 mRNA downstream 721 12837016 ~ 12860598 (+) False ahdc1
XM_034298319.1 mRNA downstream 721 12837016 ~ 12860598 (+) False ahdc1
XM_034298318.1 mRNA downstream 1314 12837609 ~ 12860598 (+) True ahdc1
XM_026929383.2 mRNA downstream 1314 12837609 ~ 12860598 (+) False ahdc1
XM_034298320.1 mRNA downstream 1314 12837609 ~ 12860598 (+) False ahdc1
XR_003403671.2 other upstream 26631 12785837 ~ 12792473 (+) True LOC113536228
TU405918 other upstream 123592 12692025 ~ 12695512 (+) False fabp3
XR_004577055.1 other upstream 1003831 11810109 ~ 11815273 (+) False sostdc1b
TU405031 other upstream 1524748 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 1525074 11292324 ~ 11294030 (+) False smim12
XR_004577016.1 other downstream 68328 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 240875 13077170 ~ 13081229 (+) True G342718
TU407134 other downstream 1369441 14205736 ~ 14219690 (+) False slc30a8
TU407132 other downstream 1397262 14233557 ~ 14249520 (+) False med30
TU407902 other downstream 2597827 15434122 ~ 15439241 (+) True G344364

Expression Profile