RNA id: XM_026946022.2


Basic Information

Item Value
RNA id XM_026946022.2
length 6592
RNA type mRNA
GC content 0.53
exon number 23
gene id wnk4b
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2671258 ~ 2741594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgagagagagagagagagagagagagagcgcagtgTTAAAGCGCTGCAGAACGCTGGAACACGCCGACGTTTGGAACTCCTTCCAGCGTTCTAGAACAGGAATGCTTTTGATCTGACGCGGAACTCGGAAAAAGATTCGAACTCGGACATTCGAACATTCAAACAAAATCCGGATTCTTTTTCTTTGATCcggttgttgctgttgttgttgtttacttttttttttctttttttttttgctcacaccTGGCGGATTGTTGTGCTGGAATATTGCATCAATCGGATcgtctgttgttgttgttgttgttgttgttgtttttttttctttctgttggaATATACAGCATGCTGAAGTTCATCCCCGCGCATAAATAAACGATGGACTGATTTCTGAAGCTCTGAAGCGCGAGCGTCGCGGTAGAAGCACCGAGCAGGAACCGAGGAAGCTTCACGATGTCCCAAGCCGAAGTGCACGCAGCAGGACTCTTCCCCAAGCTGCCCTCCAGCTTCGACGCCGATTCGTTCCTCCCCGCTCGTCTGGCGCTCAGGCGGCGGAGACACTCGGCGAGCTCGAGGCGGAACGCGTTCCGGTTTAACAAAATGCCCACGGCGGAGGAGAGCACCGGCTCCTCCCGCGAGCGCATCTCGCCTATCCTGAGCAAAACCCTCTCCTGGTCGGCGGACGACATTTTATCCGCCgagcagaagaagaacaagaagaagagcaATGCTGGAgcagcggcggcggcggcggcggacAAGCAGTGCGCGCGCTCGTCCCGCTCCAGCTCGAGCTCTCCTCCGCGCCGCGCGCAGCGCAACACCGGCAGCGCCACCGCGAAGGGCTCGAGCGCCACAGCGCCGCACGGCAGCACCGACTCCGAGGAGGAAAGCGCGCCCAAGAAAGCGCCCGAGATCAGCAGGTGGGAGCAGGAGAAAGAGGACGAGGTGGAGACCAAAGCGGTGGCCACTTCACCGGACGGGAGGTTCCTCAAGTTCAACGTGGAGATCGGGAGAGGTTCCTTCAAGACCGTGTACAAAGGACTGGACACCGAGACCACTGTGGAGGTCGCGTGGTGCGAGCTACAGaCGCGGCGGCTGAGCAAAGCGGAGCGTCAGCGCTTTAGCGAGGAGGTGGAGATGCTGAAGGGGCTCCAGCACCCTAACATCGTTCGCTTCTATGACTCATGGAAGTCCACCGTTAAAGGCCACAAGTGCATCATCCTGGTTACTGAGCTGATGACGTCAGGAACACTCAAGACATACCTGAAAAGATTTAAAGAGATGAAGTTGAAACTTCTTCAGCGCTGGAGCCACCAGATCCTGAAAGGCCTCCACTTCCTGCACACACGAACTCCACCCATCATCCACCGAGACCTCAAGTGTGACAACATCTTCATCACGGGTCCCACTGGATCGGTCAAGATCGGAGATTTGGGTCTGGCTACGCTGAAGAGCGCCTCCTTTGCTAAGAGCGTCATCGgcaCTCCTGAATTCATGGCTCCAGAGATGTACGAGGAGAAGTATGACGAGGCGGTGGACGTTTATGCCTTTGGGATGTGCATCCTGGAGATGACTACATCGGAATATCCGTACTCAGAGTGCCAGAACGCAGCCCAGATCTACCGGAAAGTCACCAGCGGCATGAAGCCAGACAGTTTTTTCAAAGTGAAAGTGCCGGAACTGAAGGAGATCATCGAGGGCTGCATCCGCATGAACAAGCAGGAGAGGTACACCATCCAGGACCTGTTAGAGCATCCCTTCTTCCAGGAGAACAACGGCGTCCACGTGGAGCTGGCTGAGGAGGACGACATGGTGAAGTCCGGCCTGAAGCTCTGGCTCCGGATGGACGACACCAAGAAGCTCCACGGCAAGTACAAAGACAACAACGCCATCGAGTTCCTGTTCGAGCTCTACAAAGACGTCCCCGAGGAGGTGGCCCAGGAGATGGTGGTGCTTGGGTTTGTGTGTGACGCCGACTACAAGCTGGTGGCTAAGGCCATCCGTGACCGAGTCACCGCCATCAAGCGGCAGCGTGAGAAGCTCCGCCGGCTGGCCGACGAGGAGCAGAGGAGACGTCAGGACGAGGTGATCGAGGAGGAACCCGAGTCCGTTCCCGAGGCAGAACCTCCCGTATCAAACCTCCCGTCTCTCCAGCCGCAAATGTCAGTGGAGAGCGGCATGTTCAGCCCGGTCCAGATGACCCCCACCGTGACCGTCTCCGCACCGCTAGTGTCCACCGCTAACAGCTCCATGGACTCTGGGATTAACGCCAGCTTCACCACCGAGCCCGAGGAACTGGACACAGAGCACCAGCCGCACTACAACATCCACCACGCCTGCTACTCCTCCGCCACGTCGGATTGCGAGACGGATGGCTACCTCAGCTCCTCTGGCCTCCAAGAGCCGCTTGAAGCTTCGTGCCCAACGCCAAGCTCCGTCCCCTCAGTCATAGCACCGCCCACTGAGGCGATGAACACTGATGTGCCAGTTTTTGAAGCTCCACCCACAGAAGCTTCACCTGTAAAGAATGCTCCAATCCCAGCACTCCGCTTTCCCTCAAGCATCGCCGTATCCCACAATTCTGAGCGAGTGCAGTCCGGCAGTGCCAGCGGCTTCTCGTCTCCCGTCGACAGTTACGCCTCTGATGTGACGTCTGGTTTGAGTGACGATGAGGGCCTATCGGAGAGGAGCAGCAAAGGTCCCAGTAAACGCACAGGAAGTAAACTGCTGAGGAAGAGAGCTCGCTCACGGCTGCGTATTACAGGGTTGTCAGATAAGGTGGACCGGGTGGTGGAGTGCCAGCTTCAGACTCACAACAGCAAGATGGTGACATTTAAATTCGACCTGGACGGAGACAACCCTGAGGACATCGCCACCGTCATGGCGCATAACGAGTTCATCCTGCCGTCGGAGAAGGAAGGATTCATCCACCGCATGAGGGACATCATCCGCCGCGCCGAGGCCCTGATGAGGAGGGAGCCTTTAGAGCCACTCGGGCCTGGAAACGTCCTCCGGCTGCCCTACCTGAGCGGAGCAGGAACTCTGTCAGGctctcagcccaacctgcacacacagggGCTGGCACGCACACACTCGTCCTCCTCGCTGCCAGATTACACTGTGGGTCAGGTAACTCGAGGCCCCTCCCCCGGAGTGGGCGGAGACTATTACCTCGATCCTGATGCAGCTATACCTGTGCGTCCTCTCCGCTCACAGTCTTTCCACACCTCAGATTACACAGCCGCAAATATGGTTCAGGTAAATCGAGGCCCCTCCCCCGGATTGGGCGGAGACTATTACCTCGATTCTGATGGGGCTGTACCCTTGCGTCCATTCCGCTCACAGTCTTTCCACACCTCAGATTATACAGCCGCAAATGCAGGTCAAGTGACCCGTGGCTCCTCCCCTGGGTTGGGCGGAGACTTTTACCTGGACCCTGATGTGGGACCACCTGTCCGCCCACTTCGCTCTCAGTCCTTCCACACATCAGGTTCATCCCAGCCCTACACTCCTTCTACGTCCCATTATCCCCAGTACCCCAAACCTGATGCCCTGCCCCTACTTCCTAATCAGATACCCACAATTCCTCCTCAGTACCCCAACCCCCAATACATCCCCAACCCACCCTACTCGTACCCCTTCATGGTCAACCAGACTCTTAAAGGCTCCATCAACCCAGCACCAAACCCTGTCCCCCAAAACCCAAGCAGCTCCAACCTCACCCCATATCCCACACCTCCCACACCCCAGCACTTGGTGGGTGATGTGGTTCCACCTGAGATCAGCCCTTTGCCACCGCCTGGTGGCCACCCCATGCCTCCGAACACACAGACGCCAGGAATCTGGCCTGCCCATTCCCAGCAGCCACTCTTCTCCCTGGCCAATGTGCTGTCTCTGGCCATGACCATGGCGCAGTCCTTCATACccccaacaaccatgccaaacGGCTTGCCCCAGGCTTACATGCCCCCGCTGGCACCCCAGCCAGGTTACCCAGCCATGTTTGGAGGCCAGCACCCTGCAGCAGGTCAGAAAGAATCTCCACCTCACCAAGATATGTACCAGCATCAGGAGGCCCAGTCACCAGCTCAGGCTCCAAGTGCGACCATCACTACTCCAGATGTGCCAGGACCACAAGGGGCAGGTGGCCAGACCGGCGTGAGCCCTCAGGAGGGGCAGGAGAAGAGCTCCTCCACTTCCTTCTCATCATCATGCAACTCCAGCGATTCGTCCAGCTCAGCCACACCCCAGAACACAGTGAGAGCCCTGGATatgGTATCTCCGCCCAGCCCCAGAAActctcagagtgtgtgtgatgccgTGGCTAAAGAAAAACTGTCTCCTATATCAGAGGAGCAAAAACCCGCCCTCACCGTGGGACGCTTCCAGGTCACTCCCAGCACAGACGAGACCACGCCCATAACCTGCACTCCCCGCCCCCCAACACCTCCTCCAGCGTCAGCCCCTTCcaccaacagccaatcagacagCAGCACTGAGGAGCAGGGCGAATCAGAGACCAGCCTCAGCACCATCTCCGTGTCTCCTCCTAACAAACCCTCAGACGTGGGCTCGAGCATCGCCCCCTGCTGGGGTGGACAAGCAGCGACCTCTGAGAGTAAAGAACAGGAcgctgaggaggaggaagagaaggaggaggaagagaaggagaaggaaggaGGTGAAGAGGGgggcagagagggagagacgaGGCAGAGGAGGATCAGTGTGAGCCTCATGGACGGAACGACGGCAGGGATAGTGATTGGAAACGTGAGTCAGCCGTGGATCAGCTACACGCGCAGCGCCTCGTACGCCAGCAGCGACGAGACCGAGAGCGACAACGAGGACATGTGGGAGGAGCTACAGGAACTCCGCGAGAGacaCCTGGGGGAGGTTCAGGCTCTCCAGGCGTCTCAGAAGCGAGAGATTGAGGAGCTGTATGAGAGGATGGGGAAAGTTCCTCCTCCGGGCATCGTGTCTCCGGCGGCCATGTTGTCCAGCCGACAGCGGCGTCTCTCTAAGAGCGGAGGCTTCCCTTCATCACGCAGGAACAGCCTCCAGAGACTCGACATACTGCCtcctacaggtaTTATGAGGAAGAACTCAGTCAGTGGCAGCAGTAACGGTTCTCAAGAGCGAGCAGCTAAAGGAGTGACCTTCGCTTCAGACTACAGAGTGTGATCCTGTTCTCTTCAACAATGCCTGTTAATCCTTCCTGACCACACCGgctgacaggaagtgacatcacggCCTTGTCTCAAGTCGTAACGCTGctccatgtggaaaaaaatgaccatGGAATGTCAGTGTGAGTCTGAGTGAAAGGAATGAGAGTGTGTTCATTCCATCAGCTGTACATCATCCGTGTGTGAAAATCGAAGTTCCTTCTTAAAATCTAATCCCAAAACAGCTGAGGGGAAGGGGCGGAGTCAATCCGGTCACATGGGATTTTTTCTGGCTACGAATAGTTTGAGAATCTCTGATATAAACCACAGTTATGAAACATTCTGTAATTCCAACTGAATCGTTTATAGTCAAAAGCTAATTTATTATTTGATGTAAATTTGTTGATGATACTGTGACGTGATCAGTTACAACATTTTTACAGCTCGCTGTCActgaaaatatcaaaacatAAAGAACTCGATCACACCGTTAAATCGTCCACAGAAGCAACAGAATACGATTGTTCGAGAGTCTGTCTTCATGATTTCAGAGGTTTAGGAAATCATTTTAATGCTAAAATTCTTCGTGAAAGTTTCTTAGACTGAATTAAGTAATTCAGAATCTTCATTAGGATTCGTTCGGATGTAACTGGGCGGTTAGCCGGAGTTAGCGTCAGCTTTCAGATTCTTTGGGAATACGACGTGTGGTCACAGATCGTCAGGGGAGGGGCCGGTGTAAAACGCTTAATCTCTCACACTCTTCCCTCTACGTTAATTTCACGTTAAGCATTTTCGCCTGAGTGGAATCAGCTtaatgtgtctcagtgtcttaAAACAACAACCTAGAAATTTCTCCACAATTTACCGATCGTAACTGTCTACTGTCAAAATAACAGCCCCAAAAAACAGCTATAAAGTTTCACGTTAATCCTTTCCATTATAAACTATTCTAATAAACATCTGTAAAGTGGAATGTGGTGTTAAATCAACACGTATGTTTATATCTTTACATACATTCACGTTTCACGTGAAGCTTTTCACaatgttcacagtgtgtgtgtgtgtatgtgtgtgtgtgtgtctgaactgCAGCTCAGTAAAACCCCTCGCTCACACACTGaccttgatttttatttttatctaaataatgaacaaattgctgatttttatgttttattttgtatttgattaTAAAAATCGCCTTTATAACTGAAATCGCCTTTATAACGAGGACGTTTGTTTTATGGATCATAGAACAAACACctcaaactttttgtttttttagagcTTTTTGCAAAACAAGATTTGCATAAAGCCAATTCATCATATAACTCAAAATTTCTCCAATATGATCttcttcttatttattaatttaatattaaaaaataacagatttatttttctttttgagacAGA

Function

GO: NA

KEGG:

id description
K08867 WNK, PRKWNK; WNK lysine deficient protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399294 lncRNA upstream 85462 2584051 ~ 2585796 (+) True G337075
TU399249 lncRNA upstream 119978 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA upstream 159591 2507560 ~ 2511667 (+) True G337066
TU399240 lncRNA upstream 273956 2397103 ~ 2397302 (+) True G337052
TU399149 lncRNA upstream 382374 2264520 ~ 2288884 (+) False LOC117595892
TU399337 lncRNA downstream 55509 2797103 ~ 2797348 (+) True G337113
TU399341 lncRNA downstream 62914 2804508 ~ 2804746 (+) True G337117
TU399343 lncRNA downstream 79496 2821090 ~ 2821530 (+) True G337119
TU399350 lncRNA downstream 91994 2833588 ~ 2834059 (+) True G337126
TU399351 lncRNA downstream 92677 2834271 ~ 2834556 (+) True G337127
XM_034298394.1 mRNA upstream 10980 2607346 ~ 2660278 (+) True arhgap27l
XM_034298396.1 mRNA upstream 10980 2607346 ~ 2660278 (+) False arhgap27l
XM_034298398.1 mRNA upstream 10980 2607346 ~ 2660278 (+) False arhgap27l
XM_034298395.1 mRNA upstream 10980 2607346 ~ 2660278 (+) False arhgap27l
XM_034298397.1 mRNA upstream 10980 2607347 ~ 2660278 (+) False arhgap27l
XM_026946102.2 mRNA downstream 103813 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 253683 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 290054 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 299774 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 299774 3041368 ~ 3067972 (+) False vwa3a
XR_004577078.1 other upstream 278780 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 278786 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 278883 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 301182 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 349841 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1610928 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3597913 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3863063 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3969421 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5541366 8282960 ~ 8285204 (+) True G340208

Expression Profile