RNA id: XM_034298397.1


Basic Information

Item Value
RNA id XM_034298397.1
length 5243
RNA type mRNA
GC content 0.49
exon number 19
gene id arhgap27l
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2607346 ~ 2660278 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagaatggtgcaaaaaacaacaacaacgcaCACTCAGAGTGCATCAGTTCTGTGGTTGATGGTGAGAGGAGGTGAGAGGAGGTGAGAGGAGGATGGCCACATGGGCTCgtgctgacaggaaggctaagGAAATGAGTGCAGACGGAGGAGGCAGGCTGAAACCAGCAGAGttctagtacacacacacacacacacacacgcatgctcgctctctctctctctctctctctctctctctctcacacacacacacacacacacacacgcacacgcacacgcacactttCACCAGCACTGGAACTTTGAGCCCCAGGTGGACGGATAAAGCTGTGAAGCAGAGAGGAACACAAACACTCAAAAGGCAAAAGGACGCTGAAAGacgagaagaaagaaaaagagagacggATACCTGTGTGTTTTTGCTGAAACTGTTGAAGAGCATGTATGGTTAGGATGGTGCTGCAATCTGGTTCCAGCAGGGGAGCCTTGCTCAAGTTCGTGACCCCAGTGTGACCTCCGCACGTGATGGGCGAGACTGGTAAGATGGCGAAGCCGTGCATGGGCCTGGTGCTGGTTGAGTTCGGGTACGAGTACCAGAACCAAGATGGCTGCATGGTGTCCATCAAACCCAATGAGAGGTACACACTCTTGGCCAAGACCAATGACCATTGGTGGCACGTACGCAAAGACGAGTACACCAAGCCTTTCTACATCCCTGCCAAATACGTCAAGGAGCTACCGTCCAGTTTGCCATCGCCCCTTGACTTTGTCGACGCCCCTGTGCCCAAGCCGACGCCTCCCGTTGTATCTGACCTTGCAGAGAAGCCCAAGTCCAATGAGGTAACCATCAGGACACGCTCTCCAAAGAACCACCGCAAGACAGAGAACCGCATGTCCACGTTTGGCGTCCCGTTGGACATCCACGAGCATTCGATGTACACGTACGGAGGTTTAGTGGACCCCATCATTTCCCTACACCCAGTCCCAGCTTCAGAACCGGCGAAGCAGAAGAGGCTCAGTCTCTCTCCAAACTTGTTACTAAGCTCCCACGAGTCGTCACAGAAGCCTCGTGCACCAAGCCTGAGCCCCGTTGACCTGCTGCTTCGCCAGGTCAAACCTGTAGAGCCTCCGGTACTCAAGAACCTGATTGACACCAGGCCTCAGGGACTGCTGCTAAAGCCTGAGCCACTCATCGAGCCAGAGGAGGAGTCCAGCCCGGAGCAGACCCCTTCCTCAGACTCGGAGAACATTTATGAATCCATATCGGATTTGAACCTGGATGATTTGGTGAAGACAGAACCTGCTGCTCAGCATGATCCTGCTCAGAGTCCACCCTCATCTACACCGCAGGGAAAGCAGGAGCGTGAGAACCCCACTATGGCGGTGTACGCTAACGTCACTGAGCTGAAGAAGCTCATGCCTCGTGTGCCTCCCTCATCCACCTCCACCTGCTCGTCTCCCGGCCTCCCTCTCAGCCCAGCTCCAGACTCGCCTGAATGGGAATCACGACCTGAGCAGGACAACAGCAAAATGTCCTACCCTGCCACACACCCTCAGAGCCCCACTCTGCCCACAGGCATGGACGCCTCGGCTCTGCCCATCCCAGCCATGCCCGCTCCATCCGTGCCCGCTCCGTTCGTGCCCGCTCCATCCTCACTGCCTCCAGCTCTCTCACAGGGATCAGACTGGGAACAGCTCCTAGACAGCACCACGGGGAGACACTACTACTACAACGCCATACTGAATCAGTCATCATGGGTCGCTCCTGAGCTGCTCAGCCCTCATCAGGAAGGACCGcccCCTTTACCAGAGGAGGATTACCCCACAAATGAGCATGACACGACCCTGCCCCCGGTTAAACATCCCGTCCTGCCTCGGGTCACTCTGGACCCCGGAGCCCCTGTACCACCCGGCTGGAGCTGCTCCACGGAGCCTGGAGGGAAAACAGTCTTCACCAATGACCACACACACCAACAGTGGATCCAGTCGAAGGACGAGAAAGGAAAGACGTACTACTACTTAAAGGGCggctctgtgtctctgtggaATCTTCCGGAGGTATCAGTGTTGGGGAACGGTGTGGAGCAGGATGGACAGTCTGTGCTTAAGAACTGGAAACCCGTCCCACAGGAGGACACGCAGAAGTTTTTCCCGTCTCACCGCAGGATCGCTTCTGATTACAGCACTGATTCATCGAGCACAGGGAATTCAGCAGACCTACATCAGGCTTCGGTGCTGGAGAAGGCTGGCATTCTCAACAAGACCAAAATAGCGGATAATGGAAAGAAACTGAGGAAGAACTGGGCTCAGTCATGGACCGTACTTCATGGAGGAATTCTCACCTTCTACAAAGATCCCAAATCCACTCCGGCTGGGAATGTGACTAAGACTAATCAGATCGTCCCGGAGTTCACAGTGGAGCTGAAAGGAGCTTCAGTCGGCTGGGCGTCCAAGGACAAGTCCAGCAAGAAGAACGTCCTGGAGCTAAAGACTCGTCATGGCTCAGAGTATCTGATACAATACGACACAGACAGCATCATCCACGACTGGCACAAGATCATCCAGGACACCATTAAACACCTGgaTCATGAACATTACtcagaggaagaggatgatgaGGTCATGGAGAAATCGACCCAGCCtgtagagaaagagaagaagaacaccaCGACGAGACAGAGCACCTCAGGCGCTGCAGATTCTGAGCAGAGCCGCGTTCGTACCAAACTGCGCAAGTTCCTCCAGAGGAGACCTACACTGCAGTCGGTCAAGGAGAAGGGCTACATCAAAGACAACGTGTTTGGCTGTCACTTGGACACCTTGTGTCATCGGGAGCTCACCACCGTCCCCAGATTTGTGGAGAAATGTATAAAGTCAGTGGAGAGGAGAGGATTAAACATCGATGGGATCTACAGAGTGAGCGGGAACCTGGCGGTCATCCAGAAGCTCCGGCACAAAGCAGATCACGAGGAGGATCTGGATCTGGAGGATGGTCAGTGGGAGGAGATTCACGTCATCACTGGAGCGCTGAAGCTCTTCTTCAGGGAGCTTCCCGAGCCGCTGTTCCCCTACAGCTTCTTCGACAAGTTCATCGCTGCCATCCAAATCAGCGATCAGAGTCAGAGGGTGTCGTATATGCGAGACTTGGTGCAAGCTTTGCCTTTACCCAACCACAACACCATGGAAGTGCTTTTCAGACACTTACGCAAGGTGGTTGATCACTGCGACTCAAACCGGATGTCTTTCCAGAGCATGGCCATAGTCTTCGGTCCTACTCTGCTCCGGCCCGAGGAAGAGTCAGGAAACATGGCCGTCCATATGGTCTTCCAGAACCAGATCGTGGAGCTCATCCTCAGCAAGTTCGATGAAGTTTTCTCTTCCAGATGAGCCGTCCAGCCTGAGTGTCGCACCTGAAGCTGTGCTTGGGCACTGCTGGACTGAGCTTTCAGTGGATTCTCTGGATCTGAAATGTTTCTGCTGTAGGATAGCAAATGCGCACACTCAGGCTAGAGCTCATTAACTCTCCATGTGGATTTCCTGTGGAATTGGAATGAAGAGACCAGGATGGATTGCACAGCAATCACAGGCGTGTTTGTTTGGCTGGATTAGCTGTTGGATTAGCATGGGTTATCAAAACATGGACTTGATGAGATCATTCAGATCCACAGTCTTGGGTGTCTTGGATGGGGATGCTAATATGAACACACCAGTTTTGCGTTGGATGGAAATTTACTCTTGCCAAAAAAAATGATAACTGTTAAAGACTGATAGAGAATGTGCTCGACATGTTTAACCTCCGTCTGGATTCACAACTCAGCAAGCGGTTGTCTAGAAATTGCCAgtggtgtattttattttatgtcagtATCTAGACTAGGCTTGTGCGATGTAGATTTTTCCCTGCTcgcaatttttaaatttaataagcGATTTAATCATCCAGAGCTGctagcctaaaaaaaaaaaagacaggaaagcGAGCGTGTCCAGCACTTCAGGTTTAGAGGAGGGCGTAATAATATTAGCAGCTGTGCAGTCGGGAACTGCGGCAATCAAGAAAAcacagctggatggtggatttttaggtgattctgTATGAtgataaacagtaaacagtttttaaaaaaaatcacaattatattttcaataattacaaaacaaaacagttgtGCACATGGCTGACCTTTTCACTGTCCTGCTCTCACAGTTATCGAACatatctgcaaaaaaaacccaaaactttatttaattacGTTCCTATTgtcatcaccattaacattatttgcaaAGTGTTCAATTTGACAAGTCATTCTGTAGGCCTGGTTAATCTTTTTGGGTCAAAATTTCTgtccttcttttctctttcagctgAAAGAGCcagtttttgaccattttcgCCAGAACCCCTGTTACAGATCGTTAACTGATGTTAGCTATATACATGTCTAATGTTATATAAGCtgaacatacactgatagatttcatTTTGCATTATTGAAACCAACGTATTCTCCATTTATGTtgacagaaagagagcgagagtcCAGTTGAGTGCAGGTGAGATTgagggaagggggcggggcttccagctGCTGTCAGTTAATCCCGTTTTATGGGAGAGAATATGCGTAAAGGTGAGCAGGTCTGGAAACATAATATGATCAGTGTAGTgatgattaaatcattatatcgcacaagcctaatCCAGGCCTTTTTTTGGGTGCCagaatttgtgtttaaatgccaaATGAGTGAGAGTTTGCTGCCTTGCCTTTTCAAACGATCTAATAATCCAGATGCACATTAAAGACCCCAGGCTggaggttgtgagttcaaatctcagaaTGTTTAAAGAGCCATGGCCTCGCTTTTGAATCACTTTGTCTAGATGCATCTGCCAAAaactaatgaataaatataaaaacattaaaaaaaagaacacaacttCCTGCCTGaggatttaaatctgattttctgCCATGCACAATAGATTTGACCTGTGATTGAATATTAAACAGGTTTAGGGTGAGAGAGaacatattatacacattacagcgtaataatgtttaatgttaaatagatcatctatatatctatatattatcTGCAGATCTGTACATAGACTGATGTTTATATGGAAGGAGGTTTATATCAAAGTGAACACATTTCATATACTATCAGTGCTCTGTAAATAAGCAATACTCAGAGGTTCCACCaaataaatattcttttaaatcAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399294 lncRNA upstream 21551 2584051 ~ 2585796 (+) True G337075
TU399249 lncRNA upstream 56067 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA upstream 95680 2507560 ~ 2511667 (+) True G337066
TU399240 lncRNA upstream 210045 2397103 ~ 2397302 (+) True G337052
TU399149 lncRNA upstream 318463 2264520 ~ 2288884 (+) False LOC117595892
TU399337 lncRNA downstream 136825 2797103 ~ 2797348 (+) True G337113
TU399341 lncRNA downstream 144230 2804508 ~ 2804746 (+) True G337117
TU399343 lncRNA downstream 160812 2821090 ~ 2821530 (+) True G337119
TU399350 lncRNA downstream 173310 2833588 ~ 2834059 (+) True G337126
TU399351 lncRNA downstream 173993 2834271 ~ 2834556 (+) True G337127
XM_034298644.1 mRNA upstream 39307 2566692 ~ 2568040 (+) True LOC117595863
XM_026946093.2 mRNA upstream 50518 2554657 ~ 2556829 (+) True ifnphi3
XM_026945970.2 mRNA upstream 56274 2541482 ~ 2551073 (+) True rdm1
XM_034298643.1 mRNA upstream 154051 2448216 ~ 2453296 (+) True LOC117595862
XM_034298848.1 mRNA upstream 219149 2358128 ~ 2388198 (+) False LOC113546300
XM_026946022.2 mRNA downstream 10980 2671258 ~ 2741594 (+) True wnk4b
XM_026946102.2 mRNA downstream 185129 2845407 ~ 2890143 (+) True tanc2a
XM_034298751.1 mRNA downstream 334999 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 371370 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 381090 3041368 ~ 3067972 (+) True vwa3a
XR_004577078.1 other upstream 214869 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 214875 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 214972 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 237271 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 285930 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1692244 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3679229 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3944379 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 4050737 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5622682 8282960 ~ 8285204 (+) True G340208

Expression Profile