Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034298643.1 |
| length | 839 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 7 |
| gene id | LOC117595862 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 2448216 ~ 2453296 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006310 | DNA recombination | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU399240 | lncRNA | upstream | 50914 | 2397103 ~ 2397302 (+) | True | G337052 |
| TU399155 | lncRNA | upstream | 157409 | 2185892 ~ 2290807 (+) | False | LOC117595892 |
| TU399154 | lncRNA | upstream | 159332 | 2186573 ~ 2288884 (+) | False | LOC117595892 |
| TU399149 | lncRNA | upstream | 159332 | 2264520 ~ 2288884 (+) | False | LOC117595892 |
| XR_004577082.1 | lncRNA | upstream | 188680 | 2242185 ~ 2259536 (+) | False | LOC117595896 |
| TU399260 | lncRNA | downstream | 54264 | 2507560 ~ 2511667 (+) | True | G337066 |
| TU399294 | lncRNA | downstream | 130755 | 2584051 ~ 2585796 (+) | True | G337075 |
| TU399337 | lncRNA | downstream | 343807 | 2797103 ~ 2797348 (+) | True | G337113 |
| TU399341 | lncRNA | downstream | 351212 | 2804508 ~ 2804746 (+) | True | G337117 |
| TU399343 | lncRNA | downstream | 367794 | 2821090 ~ 2821530 (+) | True | G337119 |
| XM_034298847.1 | mRNA | upstream | 55679 | 2358128 ~ 2392537 (+) | False | LOC113546300 |
| XM_034298848.1 | mRNA | upstream | 60018 | 2358128 ~ 2388198 (+) | False | LOC113546300 |
| XM_034298843.1 | mRNA | upstream | 96467 | 2260256 ~ 2351749 (+) | True | LOC117595892 |
| XM_034298846.1 | mRNA | upstream | 107955 | 2302145 ~ 2340261 (+) | True | LOC113546301 |
| XM_034298849.1 | mRNA | upstream | 207793 | 2209792 ~ 2240423 (+) | True | LOC113546299 |
| XM_026945970.2 | mRNA | downstream | 88186 | 2541482 ~ 2551073 (+) | True | rdm1 |
| XM_026946093.2 | mRNA | downstream | 101361 | 2554657 ~ 2556829 (+) | True | ifnphi3 |
| XM_034298644.1 | mRNA | downstream | 113396 | 2566692 ~ 2568040 (+) | True | LOC117595863 |
| XM_034298394.1 | mRNA | downstream | 154050 | 2607346 ~ 2660278 (+) | True | arhgap27l |
| XM_034298396.1 | mRNA | downstream | 154050 | 2607346 ~ 2660278 (+) | False | arhgap27l |
| XR_004577078.1 | other | upstream | 55738 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | upstream | 55744 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| XR_004577079.1 | other | upstream | 55841 | 2358128 ~ 2392375 (+) | False | LOC113546300 |
| TU399163 | other | upstream | 78140 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| TU399169 | other | upstream | 126799 | 2317025 ~ 2321417 (+) | False | LOC113546301 |
| TU400576 | other | downstream | 1899226 | 4352522 ~ 4355029 (+) | True | G338163 |
| TU401842 | other | downstream | 3886211 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU401948 | other | downstream | 4151361 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 4257719 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 5829664 | 8282960 ~ 8285204 (+) | True | G340208 |
