RNA id: XM_034298644.1


Basic Information

Item Value
RNA id XM_034298644.1
length 561
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC117595863
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2566692 ~ 2568040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGCTGTTGAAGtttgtgctgctgctggtgttcatgttcagtgtgtgtgatgctgcagCTCTGCCATCCTGCAGCTGGACACACTCCAGACTCAAAACACTGAATGAGGAGAGCAACAGACTGCTCGAGAGCATGGGTGCTCCAATGCCAATGGAGTGTTTAGAAGCAAAAAAACCCTTTCCCTCCTTTCCAAAGGATGTGTTCGTTAAAGCTCAGAATGAAGATCTGGTCTTGGTGGCTCTTGAAACTCTGAGAGGAGTTGCTACAATCTTCAAGAACAACCAAACATCAGTCACGTGGGACAGAGAGAAACTGGGGCTCTTCAAGAACATTGTAAATAGACAAGTGGAAAAGCTGGAGAAATGCGTGGGGAAAGAGGTCCAGACAGTGACGGAGAAACCTGCGGACAGCAGCACTGCTACACTCAGGTCCTATTTTGAAAAGCTGgaggagagactgaaagagaagGGGTTCAGCTCGTGCGCCTGGGAGATAGTGAGAACTGAGCTGCGCGAAGGCCTCAAGAAGTTTCAAACTTTTCTACAGAGCAGGAAATAA

Function

GO: NA

KEGG:

id description
K05414 IFNA; interferon alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399249 lncRNA upstream 15412 2450519 ~ 2551280 (+) True G337059
TU399260 lncRNA upstream 55025 2507560 ~ 2511667 (+) True G337066
TU399240 lncRNA upstream 169390 2397103 ~ 2397302 (+) True G337052
TU399149 lncRNA upstream 277808 2264520 ~ 2288884 (+) False LOC117595892
XR_004577081.1 lncRNA upstream 307156 2245940 ~ 2259536 (+) True LOC117595896
TU399294 lncRNA downstream 16011 2584051 ~ 2585796 (+) True G337075
TU399337 lncRNA downstream 229063 2797103 ~ 2797348 (+) True G337113
TU399341 lncRNA downstream 236468 2804508 ~ 2804746 (+) True G337117
TU399343 lncRNA downstream 253050 2821090 ~ 2821530 (+) True G337119
TU399350 lncRNA downstream 265548 2833588 ~ 2834059 (+) True G337126
XM_026946093.2 mRNA upstream 9863 2554657 ~ 2556829 (+) True ifnphi3
XM_026945970.2 mRNA upstream 15619 2541482 ~ 2551073 (+) True rdm1
XM_034298643.1 mRNA upstream 113396 2448216 ~ 2453296 (+) True LOC117595862
XM_034298847.1 mRNA upstream 174155 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA upstream 178494 2358128 ~ 2388198 (+) False LOC113546300
XM_034298394.1 mRNA downstream 39306 2607346 ~ 2660278 (+) True arhgap27l
XM_034298396.1 mRNA downstream 39306 2607346 ~ 2660278 (+) False arhgap27l
XM_034298398.1 mRNA downstream 39306 2607346 ~ 2660278 (+) False arhgap27l
XM_034298395.1 mRNA downstream 39306 2607346 ~ 2660278 (+) False arhgap27l
XM_034298397.1 mRNA downstream 39307 2607347 ~ 2660278 (+) False arhgap27l
XR_004577078.1 other upstream 174214 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 174220 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 174317 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 196616 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 245275 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1784482 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3771467 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 4036617 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 4142975 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5714920 8282960 ~ 8285204 (+) True G340208