RNA id: XM_026937454.2


Basic Information

Item Value
RNA id XM_026937454.2
length 5366
RNA type mRNA
GC content 0.46
exon number 10
gene id fto
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 4586607 ~ 4764886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGCACACTAAAACCATGAATTATTCGCCAAAAATcttgttttataattattcCAAAGACAGCGTTTAAGAGGTTTGCGGAAGTGGACGCGAACTACATGTCCCGCGCCGACGCGTCGTGAACTCCAGGCAGTGTAAACAGTACTCCAGGAACATGAAGAGATCGGATGACAGTGAGAGGGAAAAGAGGAGAAAGAGGCGTAGGCTCCTACAGGAACTTGGCGAGCAGAAGATCCCCTTCCTGTCTCCCTCTGATCCCGGCTTCCAGCAGCTAtgggACACCAGTTATTCGGGACTGATGTTGCGGCGCTCGGGCAGCCTTCCCCCGGGCCTGGACGAGCGTGTTCAATCTGCACTGAGCACTCTGCGTGACCGAGGCTGCCTCCTGAGGGATCTGGTGCGTGTGCGAGAGCGCGATGTGTTCACGGCCGTGTCGCGTGCCCTCGTTGGCCAGCCCGGGTGCACCTACCGCTACCTGGACACCCGTCTCTTCACCATCCCCTGGCACTGTGAGGAAGACGAGGGCCTGGGACGTAACGAAGGCCTTGGAGACAAACCCTGCTGTGATGCCGGGCTGAGAGCCGCCTGCAAGGCCTTATGGGAGCTGAACCAGTTCTTCTGCTCTGACGTGCAGCAGCATCAGAACGCCCGGGCCAGCAAACGCAAGCGCAGCGAAGCAGAAGaggaggaaggaaaagaaaaggccAAAAGTGAAGGATGTTCTGAGGATCGAACTTGcgaagagaaggaagagaggaaggcGGGAGAAGATTCAGATAGCGGACAGGGTTGCTCTCGCTCGTCTCCTCATTCTTCAAAGTCAGGCCCGATCCGGTTTAACATCACGCTCATTAACTACATGGACCCGGCCAGCATGAGCCAGCTGAAGGAGGAGCCGTATTACGGCATGGGAAAGATGGCAGTTGGATGGCACCATGATGAGAACCTCGTTCCTCTTTCGCCTGTCGCTGTTTACAGCTACAGCTGCCCGGGAGAGACCAAGACTGAAgCAGTAAAACCAGCTGAGGAGAAAGAGGGACAGACATCAAATGAAGGAGAAAAAGGAGATGAAGAAGGAGGGAGCcgagaagaagaggaagaagcagGGGATGAGGGAACGAGTaaagaggaaggagagaaagagaaggcaTGCTGGCGTGTGGGGTTGAAGGTGGCCTGGGACATCCACACACCAGGGTTAGCCCTGCCGCTGCAGTCTGGAGACTGCTATTACAtgacagatgATCTGAACAGGACACACCAGCATTGCGTACTGGCAGGAGACACGGCCAGATTCAGCTCGACACATAGAGTTGCACAGTGCATAACAGGCACTTTGGAGTACATCCAGAAACGCTGCTCTGAAGCTCTGGAGAACTTGCACACAGATCCCGAGACTGGCGCAAAGAGTCTGCGCTCGCTTCTCCTCTCCACCCTACAGCACATAGAGGACATCCataatgagGTGGAGTTTGAATGGCTGAGGCAGTATTGGTTCCAGGGCCGGCGTTATGCTCGTTTCTGCAGCTGGTGGAGTAAACCAATGGAGCGTCTGGAGACTGACTGGAAGCAGATGGAGAGGATGACTGAGCTGCTGCTGGCGGTGGTGGAGGATGAGAGCAACGTTCAGGAGAACAGACAGGAGATGGCTGAGACTCTGCTCAACGCTCTGAGTGACAGACAGCAGCATAGGCAGACCTGGAGGGACAGATGTCAGTCGAGCCTGGCACAGACTCTACCCCCTGAGGAAGCGCCTGTCGACCGACCGTATTGGACCAGCGACGACCCCGAAATGCCCCTGCCTTTTGACCTCTCCGACATCATCAGTCGGGTGGAGTCACTGCTCTGGAGgatgTGAAGATTTTGTCAGACaatgacagagagaggcagatgaaAGACAGAAAGCGATTGAGGTACCAGGAGTGGGCACAGGTGATACAGGAACTGCACTTACCTGGGGAtgagcactcacacacacacatgcacacacacgtgcacacacgcacatgcacacacacacacacgtgcacacacacacacatacacacacacacacacaccaaccagGAGACTCCAACACCGGATTGATGAACGGATGGAAAAGAAGAATGGAACTAGGATGAGACTCGGAgttctttttaatctttctcaTATCTTCCTTCATGGCCGTTTAATGTTTAGTGTTACGATGAGAACgcatttaaacatttcagcAGTAGCTTTCAGAAACCTAGTCATCCAGCTGTGTACGATTTTATTCATGTTCACGTAGTGTCTTTTAACAAGCCGTGTCTGTCCTGcatcacatatacagtatacacaatgCGCTTCACAATGCATTTACTGCTAGTTATCTGAAGATACGGAGAGGGTCCCAGCCACCAAGATGGGAGggaggtcatgtgactgatGTCTGATGATGTCATTAAGTGTCATGGCATGCTGTAGTTTTCAGTCTTGTGTGTCAGTATTGTTGATGACAactgtgtgtttgcttttgtcTGCAAGTGTATGTGCGTGTGAACTTGTGTACACAGGAGTGTATGGGTGTGTTCATGTGCGTATGAAAGTGGCAGTGAGGATGTGTACCTGTTAGTATACATGttcctgtgtgcgtgtgtgtgcgtgtgtgcgcgtcgGACGATATTGTATTGTCACTAAGTACATCTCAGAGTGTGTGGGGGGGAGAGggggtgatgtgtgtgtgtgtgtgtgtgatcattatgtttaataattttattgtcaCTAAATTCATCTCAATAAGGGGTGTcagtgaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtgtgtgtgcgtgggtgtgtgtcaCTCAGTGTGAGAAAGATGCTGAGGATGTCTGTTCATGTGCCGTTAGTATGAACATGAGCACGTACCACgttttcgtgtgtgtgtatgtgtgtggcagTGAGTACACCTGCGcttagtatattttatttttagtattgaTTTCATCTcagcatgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgttgtcagtcagTGTGAGAAAGGCCCGTGCATGTGTTGTTAGTATGAGCGTGAACATGTGCCacgtatttgtgtgtgtgtgtgtgggtggcaGTGAGTATGCCTGtgcttaatattttttttatttttagtattgaTTTCATCtcagcatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtttcatgATCGTATGAGTGTAAAATGCTGGTGTCCTTTCTGTAAAGCTATGTTCGCatagtttaaaaagaaaagagttgGAGGCCACTCCTCTACTTCACtatgactgacaggcacaggccacacctcttttactgGGACCAACATGGAGAGACAAGTAGGAAAAGAGtgtgatatcttttgtacacttttctggccacaagcttcaggatcttgaagctcgcaatctgattggctctccacATTTCTGTGTGGCAGTTTCAGTGGGAAAACAGTGCAACATAGTTAACATTTCGGAGCAGGATACAGTCACCGGGCTCCAAAAAGTAGTTGGAATCCCGTCTGTAAAAATGATCAGTTAGTGTCTTGTGAAGCAGTTAGGCCCTGTCTACATGTATccggatattttttttttgaaagcataGTTTTTACCCCTCCTCCATTTTAATAAACCGAATAGCATTTTCAATGGAAATATCTCCATCGACACGAAACCAGTTTGAAAACGCTCACATGAGCACGCTAGCCCAGTGAGTGTACCTCATAAACTGTTGTCTCAAACTCCTCAAGAATAAAGTTAAAAGTGTTTGAGTGGGAGAGAAGTCGAAATTCGGAAAAACCACCAAAACACAGAAAGATCCAAAATGAGAAATGACAAACACAAGGATTCACATGTTGACTAACGATGAGGTGGAACTACTGcttacagttacattttaataaaaagtgttCGCCCAGGTGTTGTAGAAAATCAACTTGTAGTACTGGAGCGGTGGATTCAGGAGTAGTACAGCTCATATCAtactcataataataaatatagcaaaTAAGAAAATACAGACCACAAGGTAAGAACCAGGTCAGAATCCATGATAAATGGAGTCCTAGCACATTCATAATGCATGCAAAATCTTAATGGGCGTGCACAGCTTGACACTGTGAtatcagcatttaaaaaaaaatatatatatatatatactttttaatcaaaaccattcatttttccatcataataaacaaaattcttCACCTTGGAGGGTGTTTTCAAAAATCTTTGTTTTCAGAGACctcagaaaaacattttttgtggaCAGAGCCCaaaaaattttgaaatataCATGTGGGCGGGGTCTCAGCGATGTTTAAACGAGATAGTCTCATACTGGCCATTGCAGTGCGGGAAAACGTCTGTGATTGGTCTTCGGTCATGTCAGTCAGAttgcctctttctgtgaaagtaggTGGTTCCTGGTTGCATTTATTgacaaaaagtacaaaactCTTTAGTGAAGCTAGAGGTCTGGTTTGCGAGGCTAACCAATACGAAACGTCTGTGTTGATTCATTTGGGATTCAAGTCCAGAGCACTGATTCAAATCAGTGAAACAGCAGTTTGGTTCTCTATCTTAGAAAGTACAAAATTCATGAGACCTTTCATCTTAAACCATGCAAACATAGCTCAATGAGtttgtgcatgagtgtgtgtgtgtgtgtgtgtcctcccaGGCTGATTAGTGTTGATAGGCAGCTCGGACTGAATCCTTCACTTCCTGCTTTGCGTAACTCGAACAGCCTGTCCACTCGcttccactctctctctgctctctctgctgCCGGCTGAGGAAGGAACACAGTCATCTCCACACAACTGAAAACCAGAGACGCATTGCACTAAACCATGGTGAAACGAAtgaaggatggagggagagtAGTGGATATCCTGTAGAGGAGAGaagcacaagaaaaaaaaagagctagaACATCGAAACAAGCCGAGAATGAAAGGAAGAGGATGATTGTTGAAGCCAAGcagccttcttttttttgttgttttttttaaagagctttttattctATGTCATCAGTGTTACAGTAGATCACCTGTATTATGATCTTTGATTCAGAggcttaaaatgtgttttatacttCCGAGGTTTTAGAGATGTTGCCAAATATTGTGTTGCTGCGATAATGCTGTATTGattgtatgtaattttttaaagtgtttattttatttttctctttttttttgctttctgtgtTGTACCAAATTCTTTCTTTAGTGCTCAAGGCCTACTGCATTTCTGAAAGCATTGTGTGTGCAAAGCACTAGcgataatagaaaataaaaaaaagatgctgtttTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426705 lncRNA upstream 128708 4457681 ~ 4457904 (+) True G360191
TU426682 lncRNA upstream 177077 4409056 ~ 4409535 (+) True G360174
TU426680 lncRNA upstream 178942 4403772 ~ 4407670 (+) True G360172
TU426569 lncRNA upstream 680566 3905728 ~ 3906046 (+) True G360071
TU426568 lncRNA upstream 693573 3892615 ~ 3893039 (+) True G360070
TU426969 lncRNA downstream 191540 4946207 ~ 4946410 (+) True G360433
TU426981 lncRNA downstream 292509 5047176 ~ 5047662 (+) True G360443
TU426980 lncRNA downstream 293793 5048460 ~ 5049901 (+) True G360442
TU427088 lncRNA downstream 655760 5410427 ~ 5410647 (+) True G360540
TU427114 lncRNA downstream 761541 5516208 ~ 5553167 (+) True G360565
XM_034299698.1 mRNA upstream 818898 3713652 ~ 3767714 (+) True cylda
XM_026937760.2 mRNA upstream 875056 3702186 ~ 3711556 (+) True nod2
XM_026937743.2 mRNA upstream 897504 3649957 ~ 3689108 (+) True nkd1
XM_034299626.1 mRNA upstream 1018981 3492941 ~ 3567631 (+) False adcy7
XM_034299763.1 mRNA downstream 302382 5057049 ~ 5060655 (+) True irx5a
XM_026937658.2 mRNA downstream 446866 5201533 ~ 5207120 (+) True irx6a
XM_026937657.2 mRNA downstream 446866 5201533 ~ 5207120 (+) False irx6a
XM_026937487.2 mRNA downstream 513205 5267872 ~ 5287188 (+) True mmp2
XM_026937759.2 mRNA downstream 538544 5293211 ~ 5306081 (+) True lpcat2
TU426382 other upstream 841155 3741786 ~ 3745457 (+) False cylda
TU426380 other upstream 856735 3723026 ~ 3729877 (+) False cylda
TU425321 other upstream 1921671 2636289 ~ 2664941 (+) False igdcc4
TU425115 other upstream 2247854 2321171 ~ 2338758 (+) False c25h16orf87
XR_004577234.1 other upstream 2682021 1890574 ~ 1904591 (+) True LOC117596061
XR_003404141.1 other downstream 1254926 6009593 ~ 6009707 (+) True LOC113541027
XR_003404143.2 other downstream 1255907 6010574 ~ 6010688 (+) True LOC113541029
XR_003404142.2 other downstream 1257099 6011766 ~ 6011878 (+) True LOC113541028
trnar-ucg_10 other downstream 2376657 7131324 ~ 7131396 (+) True trnar-ucg_10
XR_004577258.1 other downstream 4103427 8858094 ~ 8860313 (+) True LOC117596088

Expression Profile