RNA id: XM_026910858.2


Basic Information

Item Value
RNA id XM_026910858.2
length 891
RNA type mRNA
GC content 0.48
exon number 8
gene id eif3f
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 20946 ~ 24187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCCTGCTAACAGTCTCACTTCCTCTGTTAAAGATGGCGGTCCACGGCCCTGTAGTGAAAATCCACCCGGTGGTTCTCGCTTCAATCGCTGACTCGTACGAGCGCAGGAATGAGGGAGCAAGCCGTGTGATCGGCACATTATTAGGAACGATAGATAAACACTCTGTAGAGGTCACCAACTGTTTCTCTGTTCCGCACAATGAATCTGAAGATGAGGTGGCAGTGGACATGGAGTTTGCGAAGAACATGTATGAGCTTCATAAGAAGGTTTCTCCCAGTGAAGTCATCATCGGCTGgTACGCCACAGGATATGACATCACAGAGCATTCTGTATTAATTCATGAGTATTATAGTCGGGAGGCTCAGAACCCCATCCACCTGACAGTGGACACGGCGCTGCAGAGCAATAAAATGAACATCCGGGCCTACGTCAGTGCACAGATGGGAGTTCCGGGGAAAACTCTCGGCGTGATGTTCACACCCTTAACAGTGAAGTACGTTTACTACGACACAGAGCGCATTGGAGTTGATCTCCTGCAAAGGACTCGTGCGTCTCCCAGTCGCACCAACGGTCTGACCTCAGACTTGTCGCAGGTGGCTAGTTCAGCTGGACGCATACAGGAAATGCTCACCATAGTCCTGGCGTACATTGAGGATGTGCTGTCTGGAAAAGTGATGGCAGATAACAGTGTTGGCCGTTATTTAATGGATCTGGTCAACAAAGTACCCAAGATCTCAGCAGAGGACTTTGAGAGCATGCTCAACTCCAACATTAATGACCTCCTGATGGTCACATACCTGGCAAATCTCACTCAAGCCCAGATTGCTCTTAATGAGAAACTTGTTGTTCtgtaattgaaaaataaagacatgTTTATCATTCCATCAGA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03249 EIF3F; translation initiation factor 3 subunit F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436777 lncRNA upstream 154995 179182 ~ 184646 (-) True G368685
TU436781 lncRNA upstream 161647 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 195197 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 219990 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 257252 281439 ~ 281903 (-) True G368725
XM_026910861.2 mRNA downstream 2754 11862 ~ 18192 (-) True zgc:77880
XM_026910891.2 mRNA upstream 14548 38735 ~ 45184 (-) True npy2rl
XM_034300000.1 mRNA upstream 34849 59036 ~ 68200 (-) True rbm46
XM_034299999.1 mRNA upstream 34850 59037 ~ 68317 (-) False rbm46
XM_026910890.2 mRNA upstream 54027 78214 ~ 83790 (-) True lratb.2
XM_026910885.2 mRNA upstream 59616 83803 ~ 92020 (-) True LOC113524574
XR_004577324.1 other upstream 178467 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 887366 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1251834 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1517175 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1768000 1792187 ~ 1795224 (-) True G369586

Expression Profile