RNA id: AMCG00000287


Basic Information

Item Value
RNA id AMCG00000287
length 3511
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00000287
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9487917 ~ 9501368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCCCGGACACAGTTCCTATGGGGACAGGCCAGTAAAAGCCCAGGCACTCACTTTGCTCACGCAGAGCTCGCAGTGTGCGTCTCCCACCATAAAACGGCCGTGCTTCCTCGCATCTgcgtccaccagagctgcaggaccgaccgaccgaccggGGCAACGCCGTCGCCTTGCCCCGCTGCGTGAAGACGACGACAGGACGGAAAGgtTGAAACGGGAGTCTTTCCTTCCCTCCCCTTTGTAGCAGTGGTCAGGGCAGGATTGGAAGAGCAAGGGAAGGCTTTTTGATGCCCCTGAACCCCTATTCATCCTGTACCAGGATGGAGAAGTATGAGAAAATCGGTAAAATCGGGGAGGGCTCCTACGGAGTTGTGTTCAAGTGCAAAAACAAAGAGTCAGGGCAGATCGTGGCCATTAAGAAGTTTGTGGAGTCCGAAGATGATCCGATAATAAAGAAGATTGCACTGAGGGAAATCAGGATGCTGAAGCAATTGAAGCACTCCAACCTGGTTAACCTGATCGAAGTGTTCCGGCGAAAGCGCAAGCTGCACCTGGTGTTTGAGTACTGCGACCACACCGTCCTCAACGAGCTCGACCGCTACCCCCGAGGGGTTCCAGAGCACCTGGTGAAGAGTATAACGTGGCAGACCCTCCAGGCCGTCAACTTCTGCCACAAACAGAATTGCATTCACAGGGATGTGAAACCAGAGAATATCCTGATCACCAAACACCAGGTCATTAAGCTCTGTGACTTCGGATTTGCCAGGATATTGACGGGGCCCTGTGACTACTACACCGACTACGTGGCCACGCGCTGGTACCGCGCCCCTGAGCTCCTGGTGGGTGACACGCAGTACGGCCCCCCAGTCGACGTGTGGGCCATCGGCTGCGTCTTCGCCGAGCTGCTATCGGGAGTCCCCCTGTGGCCGGGAAAATCAGACGTAGACCAGCTGCACCTCATCAGGAAAACATTGGGCGATCTCACCCCCCGACATCAGCAGGTGTTCAGCAACAACCAGTTCTTCAGTGGCGTGAGCATCCCGGAACCAGAAGAAATGGAACCCTTAGAAATGAGATATCCTAATCTGTCCCATCAAGCACTGGGGTTGATGAAGGGTTGCTTACGGATGGACCCTGCAGAGAGGCTGACCTGTGAACAGCTCCTGGAGCACCCGTACTTCGACAGCCAGCGGGAGGAGCGCGAAGCGGCCGCCCGGGAGCAGGACCGGGCCACCAAGAGGAGATCCAGACTGCCACGCAAACACCTCCCGCCAGGGTACTTGCCTCAGCTGACTGGCAGCAACATATTCCCGTCCCTGGACAACAAGAAATATTACAGCAACTTGCGGAAGTTCAACTACCACTTCCCTAACATCTAAACACTCTGCCTCGGACCAGGAAAGACTGAGACTCGCAAGCACCcgtttctgtttgtgtctgctcgGACAAAGAAAAGCACTTGGCAGATTGGCTCCACAATCTCGTATAGAGCAGGTAGAGGGAAGAACGCGGAGGTTTCCTTGTCAGTTGGCACAGTCAGGTGCCGTCATCCTATGCACTGTAACAGCTTTTCAACTGGAAGACTATTCTGTGGTTTGACTGTCTTGATTTTCTCCTTTTGCATGTCTGTGTATTGACAAGGTTCACTACAGTGTGCCGCTATTAGATTCACAAGCAGAATTGGGCATAAAAACCATACTGCCTTCCCCAATTTGCCaaaaatatctttttttttttttttttttaaatgtacgcATTGatgttaatttccttttcttgctGGACATCTAAATTCGACGGTCGGAGAATGGTGGGAGGCCCGAGAAGGGGAGAAAGATATCTCTAGATCCAGTGCacttctccacacacacacaaaaagtctCTAAATGCAATTAAGTGATGGACAAACGAGGCATAATGCATTATTTCTTGCACCGTCTAAAATACACTTCAGGATTTGTTAAGGCGAGGGATTTTTGGTCGGAACAGACTTGCCAAACTACTTTGAAAGGTTAAAAGGTAAAATGCACGATGTCAGAGTAAATAAAATGCACGATGTCAgagtaaataaaatgcactaaTTCTTTAACAGAATCTCTCCAACCTCTTTACCTTTCATACAACTTTTAATACAGTAGCTATTTACAGGGTTTTATCAACAAGACCAACACAGAGACATTTGGGGtgtgtaataatatatacagccATTTCTGTCTCTCCCACTTCCAGATCCCCCAAAAGCCAACTTCTGAAAACCATTTGAACGCTGTCTAAACTGATACACTTCGATTGACACTTAGCCTGacttatgtttgtgtttatatatgtatgtttatccacacatgtatttatacaaacacactgtatgtacgtgtatgtacatatatacagtatatatgtatgtatttgtgtttatatattgttgtaCTTTTTTATGGAGTAATTATTAAGATCTTTAAGAACTAAAATAGcagacaaatatttaaaggtTTTGACAATGGTTATAATAAAGTGGAGTTAAATTCCTTATTTTagctttcattattttataaatggtaTTTTGTatcacaacaaaaaataacattcaggGGTTGTATTTGCTGTTCAGTCTCTCCAGCCCTGGCTGTCAGTCCAGGTCCAGCTCAATCTCCAGTTTAGGCAGAGCCGTCTGCAGCGTTTCGACGGTCCGGTCTTTCTGCTTTAATCCAGGGAGGTCACTGAGGAAAAGGTGCTCCAGATTCCTGCAGTGATGCAGGGCGAGGATGCCTCGGTCCGTCACATTGCCACAGGACACCACCTCCATCCGCCGCAGACTGGACTGAAGGTTCTCGATTTTGCTCAGTCTCTCCAGGCACACATCCTCTATGTAGATATTCTTGTTGAACTTAATCTCTTGAAGATGTTCCAAACCAtCCAGGTGGTCGAATCCTCGGAACATGATGCAGGACTCGGCTGCATCAATGGCCTGGATCTTGTACCTGCCCAGGGGGCCCGTCGGCAGGGCGTTGTAGTCATGCTGCCAGCGGTCGAAGCCCTGGTACCGCACCTTTGCCCCGCAGCGCAGGAGCCACTCGGCGGCGGCACGGTCAGGGCCCACCGCTTTGATCCGCTCATAGTCCACTTTGTTGAACACAGCATTCAGCCATCCCCAGAACTGTCTGCAGTTTTGTGGGGGAGCTGTCTTCGGCGCAGCAAGGATTAATTGAGCAGCCTTTGGCAAAAGATTCATATCCTCACCCTGAAAAAGATCATGTACTGTCaaaggttgtttttgttgtcagcTTGAAGCAGGAGACCTACacgaaatgtgaaatgtgtgtcGTACTTCAAATCTGTTTGTGCGCATGTTCAATTATATGGTGTGTGATTTATGGGCCACTGCAAGGTTTTGAACATATTTGCAGTCTATATCCTATGGGGCAGGATACAGACAGAGGCTAACTGAAACGGTCTGCAATGCGAAAACACATCTAGTCTTGCATCTAAAAACACGACGTTACCAACGTTGGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187853 lncRNA upstream 1236 9483359 ~ 9486681 (+) False AMCG00000285
TU187785 lncRNA upstream 202766 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 471766 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 814131 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 902950 8584488 ~ 8584967 (+) True G149056
TU187903 lncRNA downstream 13454 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 60189 9561557 ~ 9573564 (+) False AMCG00000281
TU187938 lncRNA downstream 218579 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 456345 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 471680 9973048 ~ 9975172 (+) True G149415
AMCG00000285 mRNA upstream 1228 9440061 ~ 9486689 (+) True AMCG00000285
AMCG00000277 mRNA upstream 60375 9414677 ~ 9427542 (+) True AMCG00000277
AMCG00000278 mRNA upstream 75585 9378563 ~ 9412332 (+) True AMCG00000278
AMCG00000274 mRNA upstream 124483 9355981 ~ 9363434 (+) True AMCG00000274
AMCG00000273 mRNA upstream 132769 9331536 ~ 9355148 (+) True AMCG00000273
AMCG00000288 mRNA downstream 325 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000286 mRNA downstream 14001 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000280 mRNA downstream 56150 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000281 mRNA downstream 71821 9573189 ~ 9591088 (+) True AMCG00000281
AMCG00000283 mRNA downstream 187379 9688747 ~ 9705449 (+) True AMCG00000283
TU187550 other upstream 906805 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2125210 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2125210 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2191253 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 467956 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1033222 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2481092 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3178302 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4189471 13690839 ~ 13692589 (+) True G150069

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013104 True 1510 mRNA 0.47 10 NC_007124.7 36693152 ~ 36703164 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_05067336_05074406.mRNA True 1717 mRNA 0.44 11 CI01000012 5066928 ~ 5074539 (+)