AMCG00000273 (trim9,LOC102776798)


Basic Information

Item Value
gene id AMCG00000273
gene name trim9,LOC102776798
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9331536 ~ 9355148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000273
CCAGCAGTGTGCAGTAAAGGATCGATGTCATGGTCTATGCGTCTCTCCCACAGGGCCAGCTGTCTCAGGCTCTCAACATTCTGTCAGACAGAGCCAAGGAGGCCAAGGAGTTTCTGGTGCAGCTGAGGAACATGGTCCAGCACATCCAGGAGAACGGGGTGGAGTTTGAGGCCTGCCTGGTGGCACAGTGTGATGCACTCATCGACGCCCTGAACAGGAGGAAAGCGCAGCTCCTCTCCCGGGTGAACAAGGAGCACGAGCACAAGCTGAAGGTGGTGCGTGACCAGATCGCTCACTGCACGGTCAAGCTGCGGCAGACCACTGGCCTGATGGAGTACTGCCTGGAGGTCATCAAGGAGAACGACCCCAGCGGCTTCCTGCAGATCTCAGATGCTCTGATCCGGAGAGTGCACATGACGGAGAGCCAGTGGGGGAAGGGCACTCTGACCCCCAGGATGACCAGCGACTTCGACCTGACTCTGGACAGCGGGCCTCTCCTGCAGACCATCCACCAGCTGGACTTTGTGCAAATGAAAGTTCCAGCAGCGCCCATCTTGCAGCTGGAGGAGTGCTGCACTCAAAACAACAGCGCCACACTGTCATGGAAACAACCTCCCCTCTCCAACGTCCAGGTTGACGGCTACATCCTGGAACTCGATGATGGGAATGGGGGGCAGTTCAGGGAGGTGTATGTGGGGAAGGAGACCATGTGCACAGTAGACGGACTACACTTCAACAGCACCTACAAATCCCGAGTGAAGGCCTTCAACACCAGTGGAGTGGGCCAGTACAGCAAGACGCTAGTGATGCAGACCTCTGAGATTGCTTGGTTCACCTTTGATCCCAGTTCGGCCCACCCGGACATCATCTTCTCAAACGATAACCTGACGGCAACGTGTAACAGCTACGACGACCGCGTGGTGCTGGGGAACACTGGCTTCTCGCGAGGGATACACTACTGGGAGCTGAGCGTGGATCGCTATGACAACCACCCCGACCCTGCGTTCGGGGTGGCCCGCGTGGATGCTCTGAAAGACGTCATGCTGGGCAAGGACGACAAGGCCTGGGCCATGTACGTCGACAACAACCGCTCCTGGTTTATGCACAACAACTCGCACACTAACAGGACGGACGGGGGGATCAGTAAAGGAGCCACGGTGGGGGTGCTGCTGGACCTGACACGCGGGACCCTGATGTTCCTGGTCAATGACGAGCAGCAGGGCCCGGTGGCCTTCGAGGGAATGGAGGGCCTCTTCTTCCCAGCCATCAGCCTCAACAGAAACGTGCAGGTGACTCTGCACACTGGATTACCAATCCCAGAATTTTACACTCCAGGGGATCCACAGCATCCCAGTTCATTGTGTTAATGGTAAAGACAACGGCTGTGGAGAAGGGAGATGAACACCTATGCTtgctcttcctcttcctctcctctctctttccctctgtctctatctctgtctgcaTCCCTTCACCACACTCTCCTTCAGTGGGTTCAGTACCCTCACTGCGGGCCCCTGGGGTGCTGGAGCCCACACTGAGACCTTCTCACTCCAGGATGCCTCCTGGAAGCAGAGAGGTCTTCACTTACTGCTGACCACAAGTCCCACTGCGTGTACTTATTGTCCATCTGCAGAGAACACAGCTAAACAGCCCGTTTTTTCATTTGGAgggtttcattttattcacGTCACAGTTTTCATGGTGTCATGGTGGTTTATATATTGTTCTTCTTGATTTAGCAGTAAGTGAACCTGAAATATCTGGCTTCTGTTCTCTGTCATCCCAAGTGGACAACTGTCTTTTCACTGCTGGAACTGGACACTGCAGACAAACCAAACTCCTTCCTGCATCAGCAACAGCCTCTCCCGATAGGGATGTGCACCAGGGGCTGGGAACTGGACTTTGGACAAGTGATGATGTACTTACATGAGTGATCCTCAAGGTGGTACCAAATTTCGAgagtaaaataaagtataagGTGTGATAGGTGGCGCAGGGAATCGGGCAGGGGCACATCTCTACTTGAGTCAACTGTAATCTTGACAGCAAAGCCTAGCAAACGACTTAATCCATGATGGTGTTTTTACACTCCTCAGTGGCCTACGCACGCAGTCCAACAATGAGCGTACCTCCAGTTATCTCCTTAATGCCTTTCTGACCAGGTGGACTTCACAATGCAACCCTGCCATTTCCCCAGCCTGGGGTGGCCCTCCATTTGCCTGCTGCCAGGGGGAATGCATGAGCTGGATGGTCAGATGGCTCCAACCAGGACAAAAGCATGGTGTTGTGGTGTAAAAGAGGCCAGCTAATAAAGACGTGTGATGATCCCTGGCAAGAACCATTAAGGGTGTTTTTTTGGGCTGATTTTGAAATGTCAGGCACTTTTCGTTGTGAGCTTGTTAGCTTTTAATGCCTAATCCTGCAGAGGTGTCTTTCAGCCAGCCAGAAAACAGCCTTCGGTCCTCCCTGCGTTCTCACCGCAACAGAACAGCCTCAGCTGGCCACAAGGGAGACCCAGTGCTTTTGCAGCGTTCCTCCAACTTGCAACTCCCAGAGATATCGTTTCTTCTCAgtgtcctttttctttcttttctacaTCGCAGTGGCACTTTTTGCACAATATTCATAAGGTGCTACAGCAGCTGGCTTGAACCAACCTAGTAATTTAGGTGATTGAGTCCTAGTGGTATCGCTGTTTTATACTATTGATCATGAAATACTCTTGTTTATAAAacgtaaatgtattatttcttggtGTCAACGTGGCTTTCAACGCGATATCTAGACATCTAGAGCCAAATGTAAAGAAAGGACACACACAGGAAGGTTCAGTTTGGAGACTAATGTTTAATAAAAGTGAAACTCATTTAATCCAGGCCTGATTTTGCGAACTCAAATTCTTATAGCAAGTCATGAGCCTCTAGTCAGCCAAGGAATCACTTTGAATGCTGAGAGTCTGGATGAGTTGAAGCATTTCATATATTTGGTTTTACTCAATTTATTTCCATTGAGTTATCAATACTAAATGACTCAAAGTATTGATTCTTGAGTAGAAATTCAAGAATCAATACATCAGGCCTACTCTCTTGATTAACTGATGGTCATGAGCCAAGGATGATGACTTTCTCCAGGCTCTTCAGGTCAAGACAACCGGAGTTCATCACTCTGAGTGTACAGTCTCCAGGGCGTAcgctttttgttcatttgtactGACCAAAATTCCTCATCTCAGGAAGTGAATCAGCTCCAAAATGTACAAGGgtgcttaaaaaaattaagttgttttttctttccaagaggggacaaaaaatgtgttacataattattttttaatccaggAGGATGGTTGTCAGCAGCTTACGTATATGAAGGTGCTGTACAAGTAAACCTACAGGGTGTGCCTTTTCTAAAAAGTATGTGAGATTTGTTTGTCAGCTGACTCGCgtatttcagtacattttataACAAAGCGCAACATTTACAATTAACATAGATGTTTAGTGTGACAGGTTACTTTAGCCAACATCCACACTCAGGACTTTCTTTGGGCAGCATTTTTTGCACATCGTTCCTACTGACCCACCTGCTTCCCCATGTGGGATTGACCCTAATCTTTGAGAATGTTAGCCCTTAGGCCTGAAGGAGCTCTAGCTTTGATTACAGATTGCATGCTGCATGGCGTTTCGGTTATTCCTTGGTAGAACAACTGTCAGTGGGTTTTGTTGAATGGGGATGGGGGAATGGATGTCCATTCCCACACCTAGTTGCCATAATGTTTACCAATGTGCCATCCCTAATCTGTTAGTACAGTCAGATCAGTACTCTTACACTAACTGGAACATGGACCTTGTATATGTGATATTGTTGTTCTGCAGATCCTGATGTTAATGTAAATCAGCGCTGGATACTCCAACTCCAGTACTGAAGCGCCACGATCCTGCATGTGTTTTACTGTAGTGATTCATAATTGATTCAATTTTTAGCACAGCTGGAATGAAAGCCACAGGCCCATTCAGCCCTTTACAGGGGACTTATTGCTAAGTCAGTAGGAAATATAATTCACCTGATTATATCATATTCTGTGAAATTGAGCCATCCTGACAGACAACCTGAAAGACTCTGAAAGCACAATAAGTGGTGAGCAATTAGATTCAAACTTTTAAACATCACCTTAATGTTTATGTCATCTCGGTATCGAGCATTGGTTTAATAGTATATCCCCGGCAGCATTTGGCAAATCCTGCTATGAAACTTCTTGAAGGAACAAGAAACACTGGCTCATAAGTGAAGGAGACCCTAACAGCAGCAGCTTTACAGTGGATTTCATTTCAATGCAAATAAGTTGTGATGAAACAGCGAGTTGACATGCATAAGAATGGAACCATATTTGGGTTCTTTTGACTCATTCATGAGGAACAAACTATCGGCActaattagatttttaatttattatcttGTATGGTTCCTCCTTGTACGAGCTGCAGTAGAAAGTAGACAGTGCCTTCAGCGGTCTACATAACGGAGCGGAAATACCAACAAAAGCATATCTTTATGGATGAGTGGTATTTGTTCTGACAAAGGGGTTTGTGctgtgctttataaataaaccaaaaatacacACTGGGAGGATGAATCACTAGCGCACAATAATGATTGTTTTCTGGCAAAGACGAAAAACAGTATAAGGCCAGCAAACTGAAAAACTGGGCAGTTTTAATGGATTTTGTGCCAGAAGCATTAGAAAGAATAAATCCTTTATTGCAGACTCGGTCTCATTTTTcccttcacatttttttttaattagtcgAAATTCTGCATTTTTGGAGCTACTACATGGTTATAGCTTCACCTTCAACTGGACTCTTTGCTAAGACCCATTCAGGACACTTCTAAATTAGATAATTATAAGGCTCCCAACAGATACTACAACCCCAGcacattatttatatcattatattttctaatCGATTTTAAGGTCCAATGGTAAGTTTAATTTTAACCAATAAGCACATGTTGTTTAGGCTATATTATACATGATTTAGTTGcttcaagatgttttttttatttcccacaaaaaaagaaaagtgtttttaatcttttacatCCCAGTATTTCTTCCCACCTGTTCCACTATGACAGTGCATGAACATTTAGCcctttttatttaatggtttcTGATGACCTGTCCCAGTGACAAGATTATTTATGTGTGATGGCTGTTTGTGAGATAAGTTGCAGCTGGGTACTTATacagttaaaacacacattcaccAGAACTGGAAGGCAAACTGCAGGGGCCGAGCTTACGTACATATCTAAGAATGTCCTGGATCCACAACACAGTTGGGTCAATATCTTAGAAGGGACTTGATACTGTAAAAGATTAATCTTGACAATTAAAATTggttgattaaaaaaagcattGGTGACCATCATAGTGCTGGTTGACTAGACTTGTCTGTATGGATCGTACTAACTAGAAAGGTGCTACACCAACCTGACCATCAAGTCCCAAACCCTTTATGCTAGCTCATTTGTGGTTTAAAGATAAAGGAGAAAGTGTTGTTGCTGGACAACAAGATGAAGTCCCTTGTTACCTGTGGGGTGCGTGTGGCCGGGCCCGCATCCGTCTCCACATGTTCTTTTCACAGTGACTGTTCTGGTTTATCGTTCTGTTCTGCCGGTCATGTAAATAGAATTGGATTGTAATGCTCACCGCCTCGTACcacagtcattgtttctgttttaatttagaattatctttatttgtttattattgtggCTAGTATcgctgttgttattattactattattgttgctattattattattaaaggcctggtgtttttctgttccag

Function

symbol description
trim9 Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in head. Orthologous to human TRIM9 (tripartite motif containing 9).

NR:

description
E3 ubiquitin-protein ligase TRIM9 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000273 True 5861 mRNA 0.45 9 9331536 9355148

Neighbor

gene id symbol gene type direction distance location
AMCG00000271 NA coding upstream 174594 9121065 ~ 9156942 (+)
AMCG00000266 NA coding upstream 251577 9035625 ~ 9079959 (+)
AMCG00000259 NA coding upstream 306809 9018662 ~ 9024727 (+)
AMCG00000258 gnpnat1 coding upstream 327022 8997132 ~ 9004514 (+)
AMCG00000255 samd4a coding upstream 385947 8924397 ~ 8945589 (+)
AMCG00000274 pygl,LOC104938237 coding downstream 833 9355981 ~ 9363434 (+)
AMCG00000278 NA coding downstream 23415 9378563 ~ 9412332 (+)
AMCG00000277 LOC106517965,LOC107602930 coding downstream 59529 9414677 ~ 9427542 (+)
AMCG00000287 cdkl1 coding downstream 132769 9487917 ~ 9501368 (+)
AMCG00000288 l2hgdh coding downstream 146545 9501693 ~ 9508924 (+)
G149253 NA non-coding upstream 46385 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 315385 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 657750 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 746569 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 747529 8583648 ~ 8584007 (+)
G149359 LOC103376870 non-coding downstream 364799 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 602565 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 617900 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 666274 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 674546 10029694 ~ 10030786 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 746263 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 756412 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1968829 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 2007085 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 2034571 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 84913 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 159674 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 206409 9561557 ~ 9591088 (+)
G149424 NA other downstream 614176 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1179442 10534590 ~ 10535137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006813 trim9 coding NC_007124.7 CM002897.2 36868365 ~ 36911118 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_04939174_04962741 TRIM9 coding CI01000012 null 4938146 ~ 4962741 (+)