AMCG00000271


Basic Information

Item Value
gene id AMCG00000271
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9121065 ~ 9156942 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000271
atgttggcCCAAGTGACAGCGCTGCTGCTCGGTGCTgcgtgcagtgtgtgtgcggTGGCTGCGCTGCACAGGCGCGATCTCTTCCCTCACGGGCCACAGACAGGAGACCTGACTCTGCAGCAAGGAGACGATGAAACCTCGGCGGTGCTGCGGCTGCGGCAGCCCCTGTATTTCTACGACACCAAGTACAGCGATCTCTATGTGGCCACCAATGGAATCATCTCGACGCAGGATCTTCCCAGGGAAACCCAGTATGTGGACGACGGCTTCCCCACAGACTTTCCCGTTATTGCGCCCTTTCTGGCCGACATAGACACCAGCAAGGGTAAAGGAGCCATCTCCTACAGGGTGGACGAGTCCCCAAGCGTGCTGTTGCGCGCCGCAGAAGAGGTGAAGAGGGGCTTCCCACGCAGGGCCTTCACCCCCACCCACGCCGTCATCGCAACCTGGGAGAACGTGGGGCCATACGAGGAGCTGAGCCCCAACGCAGGGCCTTCCAACAGGGTGAACACCTTCCAGGCAGTGCTGGCCTACGATGAGAGGGACACTTACGCCCTGTTTCTGTACCCCGAGGATGGGCTGCAGTTCTTCGGCACTCGTCCCAAAGAGTCCTACAACGTGCAGTTGGAGCTGCCTGCCCGGGTGGGCTTCTCCAAGGGGGAGGTTCCCTTCATGCTGATCTCTCGCATTGAGGGCCCTTACTACAGTGTGACGAGCACAGAGCAAACTGTCAAGAACCTGTACCAGACGGGGAACTCTGGTGTGCCAGGGCTGTGGATCTTCCACGTTGGGAGCAGCTTCTCCCTGGACAACGTGGTCCCTGCGGAGGTTGGGGGGCTCTCTGTTGTGGGAGCGTCGGTGGCGACTCTGGACAGTAACCCCAATGGGCCCTCCGAGACCGATGCAGACTACCCTGATGAAGATTACCCTGATGAGGACTACGAAGATCAGTCTGAACTAGAGTATCCCACCACGGACATCCCTGACCTCGACCAGAAAGAGCCTGCCTTCCCTCTTCCTGCCTTTCCTGAAACTCAAGAGCCAGGTCGCGGTGCCTCCATACAGCCTCCTCCTTATTCTGAGCCAGAGGAGGAACCGGGCCATCTCCGCCCAGAGTTCTCCAACCGGGACCATCCAGAGCCCTCCAGGCCACAGATCTTGGCCACCCGAGCCCCTGAACCCCGACCTTCTGGTCCCAGGGAGCACCCTCTGCCTCAGCCTAGGAACAGTCCCCCTGAAGATGCCAGTCAGCCTCAGCCCTTTCAGCCAGACCATACTGAGCTGGAGGTGCTGTCAGTCTATCCCCTGGGTGAAGTGGTGCCCATTCTGGAGAGCAGCCCCCCTCTCTCCCGAGGTCACGTGGTCAGTGTGGATGAAGATGTGAACTTTGACACAGGAGTCATCGagtacagcacagacaacaaGGAGACGTGTGCCAGGTTCCAGCAGCAGTGCTCCCAGCATGGACGCTGTGTCGATTACTCCTCAGGTTTCTGCTGCCATTGCCAGTCCGGCTATTATGGGAACGGGAGACACTGTTTGCCTGACGGTGCCCCTCACCGCGTGAACGGCAAAGTGAGTGGCCGAATATCTGTGGGTGCCACCCCGGTGGATCTGGACGGTGTGGACCTGCATGCCTATGTGGTGGTGAGCGATGGGAGGGCCTACACCGCCATCAGCCAGGTCCCCGAGCCGCTGGGCTGGGCGCTGATGCCTGTCTTCACCATCGGGGGGCTGTTTGGCTGGCTCTTCGCCCTGGAGCTGCCCGGACACAAGAACGGCTTCGGTGTGACCGGTGCGGAGTTTACTCGCCATGCTGAAGTGACTTTCCATCCTGGCAATCAGCGGCTCAGTATTGTCCAGACTGCCCAGGGCCTGGACTCCCAGAACTACCTTGCAGTCGACGCTCGTATACATGGAGATATTCCCTTCGTCCCCCCCGGCGCCACTCTGCAGATTGAGCCGTACACGGAGACGTACCACTACCACCCATCAGTGGTGACATCCTCATCTGAGCACCAGTACAAGGTCCTGTCCATGGACAGGGGCTCCGAGAGCTTCTCCTACCAGCTACGTCAGAACATCTCATACCGGGACTGTCGACACGGCCCCCGCAACACCCAGGACACCCAGCGGCTCTCCGTGGAGCGCGTCTTCGTAATATACATCAAGGAAGAGCGCATCCTCCGATACGCGGTCACCAACAAGATCGGGACTCCTGGAGAACCCACACCTGTGACTGAGAACCCCTGCTACAAAGGCAACCATGAGTGCGACACAACCGCCCAGTGCCTGCCGGGCGAGGGCATGCAGTACCGATGCCAGTGTGCCACAGGATACCGAGGGGATGGGCGCAGCTGTTCTGATATTGACGAGTGCGCTGAAGGTCTCAGTAGTTGTGGTTCCCAAGCTCTGTGCGTCAACCTTCAAGGCAGTCACCGCTGTGAGTGCAAGGCCGGCTATGAGTTTGGATTTGACGGGCACACCTGCATCGTAGTCCCCACGCAGCGGCCTGACACGGTGTGCGAGCGCTGGAGGGCCAGTCTGGTGGCGCAATACGGAGACCAGCCAGCAGGCAACCACTACCTGCCCCAGTGCGATGAGCTGGGCCAATTCAACCCCCTGCAGTGCTACGGAGACAGCAGCTACTGCTGGTGTGTGGACAAGGATGGCAGGGAGGTGCCCGGGTCTCGCTCTCAGGACTCCGTCAAGCCTGCCTGTATACCAACAGTGGCCCCTCCTACTATGCGTCCGACACCACGCCCTGATGTGACCCCACTCCCCCCCGGAACATCACTGTTGTACGCCCAGGGCCAGCAGATTGGTGCCCTGCCACTCAATGGCACCACCATGGACAAAGACAGGGCCACTGTACTGCTGGCACTGCACGGCTCCATTGTGGTTGGGATTGACTATGACTGCAGGGAGAAGAAAGTTTACTGGACTGACTTAGCAGGACGGACCATCAGCAGAGCGAGCCTGGAGCCCGGAGCCGAGCCCGAGATTGTCATCAACACAGGACTCTTAAGCCCTGAGGGCTTGGCTGTGGATTCCCTGCGGAGACGAATGTTCTGGGTGGACAGCGGGCCGGACAAGATTGAGATGTCCAACCTGGATGGCACTGGAAGGAGAGTTCTTTTTGACACAGAGTTGGTCAACCCCCGAGCCATTGTGGTGGACTCCTTCAGGGGAAACCTGTACTGGACTGACTGGAACCGTGAAGCTCCCAAAATCGAGACCTGCACTGTGGAGGGACGCAACCGGAGGATCCTGGTGAAGGATGGCATTGGACTGCCCAACGCCTTGACCTTTGACACCATCACCAATGAGTTGTGCTGGGCAGATGCAGGCACCAAGCGGCTAGAGTGCATCGCGCCAGATGGGACAGGAAGACGTGTTATCTACCACAGTCTGAACTACCCCTTCAGCCTGGTCTCGTACTCCAACCACTTCTTCTACACTGACTGGAGAAGGGATGGTGTGATTTCCCTGAACAGAGACACCGATGAGATCAGAGAGTACCTGCCCGACCAGAGGTCCCATCTGTATGGAATCACAGTCGCCTACCCCCACTGCATATCAGGGCAGGTCTGGAAGAGCCGAGGTCTCCAGGGAGCTCTGACCTCAGAGGGGCTGGAGAACTGGCCGTGTTCAGGAACTCAGATTTACTGA

Function

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000271 True 3672 mRNA 0.59 18 9121065 9156942

Neighbor

gene id symbol gene type direction distance location
AMCG00000266 NA coding upstream 41106 9035625 ~ 9079959 (+)
AMCG00000259 NA coding upstream 96338 9018662 ~ 9024727 (+)
AMCG00000258 gnpnat1 coding upstream 116551 8997132 ~ 9004514 (+)
AMCG00000255 samd4a coding upstream 175476 8924397 ~ 8945589 (+)
AMCG00000256 NA coding upstream 214669 8902907 ~ 8906396 (+)
AMCG00000273 trim9,LOC102776798 coding downstream 174594 9331536 ~ 9355148 (+)
AMCG00000274 pygl,LOC104938237 coding downstream 199039 9355981 ~ 9363434 (+)
AMCG00000278 NA coding downstream 221621 9378563 ~ 9412332 (+)
AMCG00000277 LOC106517965,LOC107602930 coding downstream 257735 9414677 ~ 9427542 (+)
AMCG00000287 cdkl1 coding downstream 330975 9487917 ~ 9501368 (+)
G149172 psmc6 non-coding upstream 104914 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 447279 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 536098 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 537058 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 1164676 7955972 ~ 7956389 (+)
G149253 NA non-coding downstream 123121 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 563005 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 800771 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 816106 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 864480 10021422 ~ 10021853 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 535792 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 545941 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1758358 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1796614 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1824100 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 283119 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 357880 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 404615 9561557 ~ 9591088 (+)
G149424 NA other downstream 812382 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1377648 10534590 ~ 10535137 (+)

Expression


Co-expression Network