AMCG00000256


Basic Information

Item Value
gene id AMCG00000256
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8902907 ~ 8906396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000256
CCAGTGCGCTCCAATGAGAAGAGGTTGTTTTGGTGCCTGTATCTCTAATGGCTTTGACATGGCTGCTGCCTTTCTAGTGTTGTTATACGAATATTCCCCTCCGTTTTACATCTCTGTCATCGCCCTGTGCTTTATCGTCACCGCGGCCATGGTGCTGGGCAGGTTCGGGTTTGACGTACCGGTGATCTTACGTAGCTCTGACGACACAGACCCTCTCCTGAATATCCCGGAAAAGAGAATGGTGCAGGTGAAGAACCCCTTCGCCTTGGATATCGGCAGCACCGCGGGCTCTGTGACGGGTGGAGTGGGTCTGAGGCCATACTGCCTGGAGAGCTGTGTCCTCACCTGCTATTGGGGCTGCACGGCCCAGAGCCTGCAGGCAGCGCTGCAGTGTCACCAGTTCAACGTGCGCATCAACACACCACAGAGGTTCGAGGAGGCCCTGAACAGTGACTACCAGCACTCCCAGACCTTCTTTATTGACAAGGAAGACACACAAGAGAGGCTCTGTCAGCTGCCTGACGACTTGGGGATAACAGATTTTGGGCTCTTACCTCGGTCGCATTACCCCCTAGCTGCCAACGTGACTGTAATTCATGTTCCTGATGACAAATACAGGCTTTCCTCTCGGATTCTGTATCACTACATTCTGACGGCATCAGGGAATGTGTATGACCTGAAGCAACTTTACATGTCGGCAGATGGCAAAGACTGGTCTGGAGTCTCTGGACCTCCCAGCGGTGAGACAGTGGAGGGGCGGGGTGAGGAGAACCCAGAGGAACCGCAAAGCGAGGCGGGGACCGATCCGGAGACGGAGGGCGACGGAGAGACCGGCCTAGATTGCGTGGTGTGCCAGTACGCCCCAGTGAATCGCGTTCTGCTGCCCTGCCGACACACCTGTGTGTGCGACGGCTGCGTCTCCCGGTTCAGGCACTGCCCCGTGTGTCGGGCCTTCGTAATGGAGTCCTTTGCTCTTTCCCCTCCCTccacagaggaagaggaagtaggcAGGGAGTAGGGAATAATGTCCCCCCTGCTTGGCTCACTTCTATTGGAGGAGAAAAGCCTCCAGGACATGGCAGTATGGCGTCAGCTGCCTCGGCACGCCTTCACTTTATATTGATGAAGAATACGTTGAGATATCCTGAAAAATGGTTTTCTCTTTAAAGTCTGATGAGACCGCTTTTGGATTGCACTCGCTCTCGGTAGAAACCTttcacaaaaaggaaaaacaggcACATAAAGCTCAGACTTGCTTCACATTGCATCTCCTTTTAATCCTTTACATTCATCAGAAGGGTTTCATACGGATGATGGACTTTTCCGCACCGTGACGGTGTTTTGAAACTCAATTTAATGTCAAGTATTGTAGGATATTATGCCAATGGCACAAGGACTCGTATTCCTTTGCTGACAGTGAACAGTGGAAATCCctaatgcagaagaaaaaataaaacaatatccgCTTTCTTAAAAGGTGAATTCAACTTTTCAAATCTAAGCATAATTAAATCTGCATAGAAAGGGTATAAACcatcattttcaaaacagataATAAATATCAGTAGTCAAACTATCACCATTTATTGATAAAGTACTTAAAACTAAGTATGAACTGTCGTCTACATTACAGTGTGCAAATCCTGACATTTAAGACATACATCATATTTTAGTACCCGATAGAATTAATTTTGAGAAGTAATGCACTAATCTGTATTGACCATTTTCCCCCTTCCTCTAGTCATGAATGTATATCATAGCCAGTGAAGTATGAGCATGTTATTTTGATGAgaacaaagcattttttttctccttaacaTTCACAAAAATTaattgtggagtagtggtcagggctctggcaGAGGTTTGTGGGTTCAATCTCAGGTGGTGAacactgttgtacccttgagcaaggtactttacctggattgctccagtaaatacccagttgtataaatggataattgtatgtaaaaaataatgtaatatattgtaagttgccctggataagggctacaaaatataataataattactacttGGATCATAATTGCGCTTTCTGTTTTTTAGCCTTTGATGATCGTTAATTTACTGTTTTGTTACAGTGTCGATGCTTTGAATCttgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000256 True 2128 mRNA 0.46 6 8902907 8906396

Neighbor

gene id symbol gene type direction distance location
AMCG00000252 gjd2,gjd2b coding upstream 315552 8585904 ~ 8587355 (+)
AMCG00000244 NA coding upstream 333237 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 352048 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 377683 8519864 ~ 8525224 (+)
AMCG00000245 NA coding upstream 419210 8473574 ~ 8483697 (+)
AMCG00000255 samd4a coding downstream 18001 8924397 ~ 8945589 (+)
AMCG00000258 gnpnat1 coding downstream 90736 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 112266 9018662 ~ 9024727 (+)
AMCG00000266 NA coding downstream 129229 9035625 ~ 9079959 (+)
AMCG00000271 NA coding downstream 214669 9121065 ~ 9156942 (+)
G149059 NA non-coding upstream 229121 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 317940 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 318900 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 946518 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 1143310 7759369 ~ 7759597 (+)
G149172 psmc6 non-coding downstream 106975 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 373667 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 813551 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 1051317 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 1066652 9973048 ~ 9975172 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 317634 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 327783 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1540200 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1578456 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1605942 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 533665 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 608426 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 655161 9561557 ~ 9591088 (+)
G149424 NA other downstream 1062928 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1628194 10534590 ~ 10535137 (+)

Expression


Co-expression Network