AMCG00000245


Basic Information

Item Value
gene id AMCG00000245
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8473574 ~ 8483697 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000245
GTCGGCGAGACTGTGTTTTGTGCAGGTCAGATCGGCCTGGTCCCCTGTACGATGAAGCTTGTGGAAGGAGGAGCCCAGATTGAAGCCTCACTCTCCGTCGGCCATGTTGAGAAAGTGTTGGATGCCATGAGCAGTGGTCTGACGCTGAGCCATGTTCTCCTGGCACACTGCTACGTCACATCCAAGATGGCCGTATCTCTTGTCCGGAAACTGTGGGAAAGCAGGTTGAAAGATCAGTGCGGAGAGGATGAAGTGTATGGCGAAGAAGACCAAAAGAGTGGACCTTTGGTGGTATCTGTTATTCCCCGTCTGCCCAGAGATGCCGCTGTGGAGTTCCACGTCATCGCTGTCACCGATGATCCCAGGCATAGGAAATCCTTTTATATCACCAAAGATGTAGCACCTGGCATCATAGAGTGTGAAGTTGTAGAAGCCAGTTCTTCGTCTTCAGCCACCATCTCCCTGTCACTGAgcttgcctctctctccctgcgcCACGATCCAGGAAGAGACGGTTCAAAGTCTCGTCTGTACCTTCCAAGAAAGCCTGGAAAAGCTGGACAGCAACACCTCTCCCTTGTGTTTCAGAGCTTTCTATAAGCACAGCCGCAGTGACGCTGCACAGCTTGTGGCTGGTAAATCTCAcccatctctcactctcttcccTAACATTCTCTTCTTTATGTGGTGCGGTGCCATTCTCATGGTGAATGGCTAG

Function

GO: NA

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000245 True 717 mRNA 0.52 3 8473574 8483697

Neighbor

gene id symbol gene type direction distance location
AMCG00000248 NA coding upstream 16286 8442303 ~ 8457288 (+)
AMCG00000247 dph6 coding upstream 46938 8424584 ~ 8426636 (+)
AMCG00000232 meis2 coding upstream 353469 8108618 ~ 8120105 (+)
AMCG00000238 NA coding upstream 587130 7871530 ~ 7886444 (+)
AMCG00000221 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 732767 7702819 ~ 7740807 (+)
AMCG00000250 NA coding downstream 36167 8519864 ~ 8525224 (+)
AMCG00000246 NA coding downstream 43741 8527438 ~ 8550859 (+)
AMCG00000244 NA coding downstream 83770 8567467 ~ 8569670 (+)
AMCG00000252 gjd2,gjd2b coding downstream 102207 8585904 ~ 8587355 (+)
AMCG00000256 NA coding downstream 419210 8902907 ~ 8906396 (+)
G149001 NA non-coding upstream 517185 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 713977 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 789477 7683878 ~ 7684097 (+)
G148791 NA non-coding upstream 1381114 7092025 ~ 7092460 (+)
G148768 NA non-coding upstream 1538414 6933300 ~ 6935160 (+)
G149055 NA non-coding downstream 99951 8583648 ~ 8584007 (+)
G149056 NA non-coding downstream 100791 8584488 ~ 8584967 (+)
G149059 NA non-coding downstream 185283 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 529674 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 796366 9280063 ~ 9285151 (+)
AMCG00000217 gpx2 other upstream 1110867 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1149123 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1176609 7290666 ~ 7296965 (+)
AMCG00000198 LOC106586563 other upstream 1952711 6500893 ~ 6520863 (+)
AMCG00000201 NA other upstream 1999342 6469345 ~ 6474232 (+)
AMCG00000251 NA other downstream 89239 8572936 ~ 8575124 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other downstream 96020 8579717 ~ 8585273 (+)
AMCG00000285 map4k5 other downstream 956364 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 1031125 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 1077860 9561557 ~ 9591088 (+)

Expression


Co-expression Network