AMCG00000247 (dph6)


Basic Information

Item Value
gene id AMCG00000247
gene name dph6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8424584 ~ 8426636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000247
ATGCAGTGTGTTGCAGCTGGACATCAGATTGTGGCTTTAGCCAACCTGCGGCCTGCAACAGATAAAGATGAGTTAGACAGCTATATGTATCAGACTGTGGGCCACCAAGCTATCGACCTCTATGCTGAAGCCATGGACCTGCCCCTCTACAGACGAACTATTGAAGGAGCGAGTTTGGAAATTGGAAGAGAGTACTGCAAAAATGAAGGGGATGAAGTTGAGGATCTATATCACTTGCTGAAGCTTGTTAAGGGCATCACCGACATGACCTCTCCTGCTAAATAG

Function

symbol description
dph6 Predicted to enable diphthine-ammonia ligase activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Is expressed in female organism. Orthologous to human DPH6 (diphthamine biosynthesis 6).

NR:

description
PREDICTED: diphthine--ammonia ligase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000247 True 285 mRNA 0.47 3 8424584 8426636

Neighbor

gene id symbol gene type direction distance location
AMCG00000232 meis2 coding upstream 304479 8108618 ~ 8120105 (+)
AMCG00000238 NA coding upstream 538140 7871530 ~ 7886444 (+)
AMCG00000221 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 683777 7702819 ~ 7740807 (+)
AMCG00000220 vps18,LOC106571062,LOC107739368 coding upstream 727453 7690570 ~ 7697131 (+)
AMCG00000235 NA coding upstream 750017 7663322 ~ 7674567 (+)
AMCG00000248 NA coding downstream 15667 8442303 ~ 8457288 (+)
AMCG00000245 NA coding downstream 46938 8473574 ~ 8483697 (+)
AMCG00000250 NA coding downstream 93228 8519864 ~ 8525224 (+)
AMCG00000246 NA coding downstream 100802 8527438 ~ 8550859 (+)
AMCG00000244 NA coding downstream 140831 8567467 ~ 8569670 (+)
G149001 NA non-coding upstream 468195 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 664987 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 740487 7683878 ~ 7684097 (+)
G148791 NA non-coding upstream 1332124 7092025 ~ 7092460 (+)
G148768 NA non-coding upstream 1489424 6933300 ~ 6935160 (+)
G149055 NA non-coding downstream 157012 8583648 ~ 8584007 (+)
G149056 NA non-coding downstream 157852 8584488 ~ 8584967 (+)
G149059 NA non-coding downstream 242344 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 586735 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 853427 9280063 ~ 9285151 (+)
AMCG00000217 gpx2 other upstream 1061877 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1100133 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1127619 7290666 ~ 7296965 (+)
AMCG00000198 LOC106586563 other upstream 1903721 6500893 ~ 6520863 (+)
AMCG00000201 NA other upstream 1950352 6469345 ~ 6474232 (+)
AMCG00000251 NA other downstream 146300 8572936 ~ 8575124 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other downstream 153081 8579717 ~ 8585273 (+)
AMCG00000285 map4k5 other downstream 1013425 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 1088186 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 1134921 9561557 ~ 9591088 (+)

Expression


Co-expression Network