AMCG00000252 (gjd2,gjd2b)


Basic Information

Item Value
gene id AMCG00000252
gene name gjd2,gjd2b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8585904 ~ 8587355 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000252
ATGGGGGAATGGACCATCCTAGAGAGGCTCCTGGAGGCTGCTGTCCAGCAGCACTCCACTATGATAGGAAGGATCCTATTAACAGTGGTGGTGATCTTCCGGATCCTAATAGTAGCGATAGTCGGAGAGACCGTCTATGATGACGAGCAGACCATGTTCGTGTGCAATACCTTACAGCCGGGCTGCAACCAGGCTTGCTACGACAAGGCTTTCCCCATTTCCCACATCCGATACTGGGTCTTCCAGATCATAATGGTGTGCACCCCCAGCCTTTGCTTTATCACCTATTCGGTGCACCAGTCTGCAAAGCAGAAAGAGCGACGATACTCCACCGTGTTtctcaccctggataaggaccaGGACTCAATGAAACGAGAAGACAGCAAGAAGATTAAAAACACCATCGTGAACGGAGTGCTGCAGAACACAGAGAACTCCACCAAAGAGGCCGAGCCGGATTGTCTGGAGGTCAAAGAAATCCCAAACTCGGCCATCAGGACTACTAAGTCCAAAATGAGACGGCAAGAAGGCATCTCAAGGTTTTATATCATCCAGGTAGTCTTCAGAAACGCACTGGAGATAGGCTTTTTAGTGGGCCAGTATTTCCTGTACGGATTCAACGTGCCCTCGGTGTACGAGTGTGACCGGTACCCCTGCATAAAGGACGTGGAGTGCTACGTGTCCAGACCCACAGAGAAGACTGTCTTTCTGGTGTTCATGTTTGCTGTCAGTGGGATTTGTGTGGTCCTCAATTTAGCAGAGCTCAACCACTTGGGCTGGAGGAAAATCAAAACGGCAGTGAGAGGGGTGCAGGCCAGGAGGAAGTCCATCTATGAGATCAGGAATAAAGACCTGCCCCGGATGAGTGTCCCCAATTTCGGCCGCACTCAGTCCAGCGACTCTGCTTATGTGTAG

Function

symbol description
gjd2b Enables gap junction hemi-channel activity and voltage-gated ion channel activity. Acts upstream of or within cell-cell signaling. Located in gap junction. Part of connexin complex. Is expressed in several structures, including heart; kidney; liver; nervous system; and neural tube. Orthologous to human GJD2 (gap junction protein delta 2).
gjd2 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within action potential; chemical synaptic transmission; and visual perception. Predicted to be located in gap junction. Predicted to be part of connexin complex.

NR:

description
PREDICTED: gap junction delta-2 protein

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000252 True 915 mRNA 0.51 2 8585904 8587355

Neighbor

gene id symbol gene type direction distance location
AMCG00000244 NA coding upstream 16234 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 35045 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 60680 8519864 ~ 8525224 (+)
AMCG00000245 NA coding upstream 102207 8473574 ~ 8483697 (+)
AMCG00000248 NA coding upstream 128616 8442303 ~ 8457288 (+)
AMCG00000256 NA coding downstream 315552 8902907 ~ 8906396 (+)
AMCG00000255 samd4a coding downstream 337042 8924397 ~ 8945589 (+)
AMCG00000258 gnpnat1 coding downstream 409777 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 431307 9018662 ~ 9024727 (+)
AMCG00000266 NA coding downstream 448270 9035625 ~ 9079959 (+)
G149056 NA non-coding upstream 937 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 1897 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 629515 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 826307 7759369 ~ 7759597 (+)
G148919 NA non-coding upstream 901807 7683878 ~ 7684097 (+)
G149059 NA non-coding downstream 81625 8668980 ~ 8673786 (+)
G149172 psmc6 non-coding downstream 426016 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 692708 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 1132592 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 1370358 9957713 ~ 9962571 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 631 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 10780 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1223197 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1261453 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1288939 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 852706 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 927467 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 974202 9561557 ~ 9591088 (+)
G149424 NA other downstream 1381969 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1947235 10534590 ~ 10535137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017926 gjd2b coding NC_007131.7 CM002904.2 9958506 ~ 9963713 (-)
grasscarp (Ctenopharyngodon idella) CI01000316_01112412_01114286 GJD2B, GJD2 coding CI01000316 null 1112074 ~ 1114489 (-)