AMCG00000255 (samd4a)


Basic Information

Item Value
gene id AMCG00000255
gene name samd4a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8924397 ~ 8945589 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000255
TCGGCTATAGACCTGGCTCTGTTATCACGCAGCGCACGGGGGCGGCTCACAGTTTCCATTGCCCTCATCAGCTCTCCAGCGTGTCTTTTGATCAGCCAGTGGCAAGGCGAACCCAAGGAGCGGGTGATCTCCCTGGTGCTGACTCACCTGCCCCTGCTGAAGCCAGGGAACATCGAGGCCAAGGGAGAGTACATGCGCCTGCTGCCCAAAATCCTGGCCCACACCATCGAGCACGGCCGCCACCTGGAGGAGAGCCGCCAACTGCTGTCCTACGCTCTGATCCACCCCGCCACCTCCCTGGAGGACCGGGCTGCCCTGGCGCTGTGGCTGAACCACCTGGAGGAGCGGGCGGCAGCGCGGGGGGGGAGCGATTCGCTGGAGCGCACCCCCACTCCCCTTCATCAGCATGGCCATCTCTACCCCCACCACCAGCGCTACGGCTCGGACGACCGCCTTAACGGCTGGCAGAGTCCGCGGGACTCCAGCCTGGGTGGCAGCAGTGGAGGGGGAAGCGGCGGCTGGCACCACCAACAGGGCTGTGAGAACGGGCACCTCTCGCTctacccctcctcctccatgccCTCCACCATCAACACCGTGGGCACCAGCAGTGGGACCAACACCATCCTGTCTGCCGGGCAGCACAGCCCCCTGAAACGCTCCGTATCCCTCACTCCCCCGATGAACGTGCCCGCGAGCCAGCCCCTCGGCCATGGCTGGCTGTCCCAGGAGGACCTGCGAGTGCGCGGCCTGGCCCCCGACCATGCGCCCCTTTCCCCCCAGAGCAGTGTGGCGTCCTCGGGCAGCGGGGGCAGCGAGCACCTGGAGGAGAACCCCGCCCTCAGCGTCACGCCACACCGCAGCACATTCCACGAGGAGGGCAGCGGTATGAGGGATGTACCAGCTTGGCTGAAGAGCCTCCGTCTGCACAAGTACGCAGCTCTCTTCTCCACGATGACCTACGATGAGATGATGTCACTGACTGAGCAGCAGCTGGAGTCCCAGAACGTCACCAAAGGAGCCAGACACAAGATCGTCATCAGCATCCAGAAGCTGAAGGAGAGGCAGAACATGCTGCGCTCTCTGGAGAAGGATGTGCTGGAGGGGGGGAACCTGCGCACGCCCCTGCAGGAGCTGCACCAGATGATCCTGACGCCCATCAAAGCCAGCAGCAACGGGGACTCGGCGCAGCGCTCCCTGCTGGGCTCCGACAGGAAAGGCGGCAGCCCCTCCTCCCAGCTGGGGGGCGGGGAGGCGGAGTCGGGGGGCGCGGTGATTGCAGAGGGGGACCTCCCTGCCCAGTTCACTCGAGTCATGGGAAAAGTTTGCACACAGCTTCTCGTGTCCCGGCCTGATGAAGAGAACATCAGCTCCTACCTGCAGCTCATTGACAAATGTCTCCTCCACGAGgCTTTCACAGAGACGCAGAAGAAGCGgctgttgtcatggaaacagcAGGTGCAGAAGCTGTTCCGTTCGTTCCCGAGGAAATCCCTCTTGGACATGGCAGGATATCGGCAGCAGAGAAGTCGTGGTTATGGTCAGTCCAACTCTCTACCAACCACGAGCTGTGTCGGTGGAGGGGTGTCGTCCCGTAGGAACCCGCGGCAGTTCCAGATGCCGTCCCGGAGTCTGCCTGCCGCCAGGCTGGGGCTGCTGGGCACTGCTGGCATCCTGGGACCAACGCAGCGCAGCGCCAGCAGCACCCCCACCAGCCTGAAACAAGGCCGACAGGGCCTGTGGTTTGCCAACCCCGGTGGCAGTAACAGTATGCCCAGCCGAACACACAGCTCCGTCCAGAGAACCCGCTCGCTGCCGGTCCACACCACCCCACACACTATGGTCATGTTCCAGCAGGCGGAGTTCCAGGTGCCGGTAACGGAGCCCGACATCAACAACCGCCTGGAGTCCCTGTGTCTGAGTATGACGGAGCATGCTCTGGGAGATGGAGTGGATCGGACATCAACCATCTGAGGTTGGAGTGAGGAGGCCCAGGGAGACAGTGCTGGCCAGGATTCATGGGAAAGGTCACCCTGAGGTCAAGAGGGGTCACCCACTTGCCCACCTACCTATTCAGCTGCCACCAGGGGCACTGGGACATCCAAAAACCCCATTCGCCATTTCACAAAAGGCTCTCCATTGGTATTTTTTGTTGTCACTATTAACACTAACTTTTTGTGAACAAAAAAATGGCACGTTTACAAGTACCAGGCTTTTTGGAAAAATGGTCCTTAAGATAAACGACTGTTTGGTGAAGAAGAAGAGCAAAAAACACTAAATGATGATAAAAGTGTGACGAGCTACTCCGAGGTCTCCCTAGATACTGGATAAACCACCAACAGAACTGCCCCAGTCAAAACGATAGACCTTCAGCTATGACGAAGCAGGGGCTGCTGGAATTCGGGCAGCAGTGAGTCCATGGGACACACCATGCTGGCCCCGCAGGCGCCTCCTCGTACAATGCGAGTCCCATCACAGGAGCTGTAGTCTTGTCTGTAAACAAACAAGCCAGCCAAACAATCACCCGGcgctttgtttgtttggatatTGTTTCATGAACGAGGAAGGAGAGTTTGGGAGAAGAACTTTGTACAGAGGGTGAAAGAgcagatatatacatatataagtattGTTTACATAAACTGCAACTATTAAGGGTACCGAAACATTTATAAAGTTCAGGTATgaatgttgttcttttttttttttttaagcaatgttattataaatgctaatagttttatttttcctggagttttttttctccaacCAGCAGATAAAGCTGAGGCAAAGAGACTAGGAGATGCTGTTAATTTTGCTGTCTATGTAGGGATCTAAGGGAAGGCCATGCGTAGGACTGCCAGGGCAGTGTGGTACAGGATGAAGGAAGGAGCAGGTGAATCGAGTGAGTAGGAGGAGTTTTGATGCATAGAGGGACAAAGCAGGAGGATTAAGTTGGTTATTAACATATTTGTGGTCCGAAGCAGAGGTTTGTGAGTTTGGCCAGGAAAACAAGCGTTTGTTGGGTCATATTCAGACCCAGGCACGTCTGAGTTGCTGCCCCCTCTCCTGTGAGAGACTCGGTTCCCATCTCCACCCTGTCACCATGATTTCTATCCGTTAACCTGCCTCCCTCTGTTTTCCAGCAGTTGTCATTTGCACTTACAGATAATCCATATTCGTATTGCCTGATTGGCTTTCTCtgcttgtatttgtatttgcctTTTACACCTTTGCAATGAAGCACAAAGCAAAGactttatagtttttttattttattttacttggaTAAAGAAATACATGGGCCAGAGGCAGGTGGGAGTAACTGCTACTTTCTCTTCTGTGAAGAGAAGCAAGGTGTGTCCCAAGTTAGAGACGGGTGTCTTTTCTGAGCATGAACTCCTGGTATGGGGGGAGGACAGATCCAATCTTTTTTTTCAGTagtatatttgtaatttattcatttaatttcattagaaGTAGGCAAGGAACACATGAGCTGATAACTTTATATTCATAATCATATGGggtaatttgtattaaataagaATTATACTACATTGAAATAAGTTTCGGAAAGttattttgcagtttgcagTGACTATGAAAAACATGATGCTGTAAGTCAGGTGATCTTGGGTTTGGATCTTGAGATTCTTGTGTATTTAGGAAAAAACATTAGAATTAATGAGTTAATTCATATCAATTGATAAGAGGCTGCTGGAAACTGGTGAGAGACTGGGGTGTGAGAGTTGAGCTACTGAGTTTAATGAAAGTCTATGTAGGTTTTAATCGGTTATGTTGATTTTCCAAAAGAGATTGGTTtagtatgtgtgtttatgaggGATTTTACCCATCAGCTTTTAACTGTTGGCTAGTAATAGAAGGCATACTGTATAGCTGAATTCTGCAGAGTGACTCAATCTACATGTAGGGAAGGGGGGTGTGGTGTTAAAGAAAAGGATGGAAACAGACAGGAAGTATGAAAACAGCAGCATTTTGATGCATAGTGTAGCTTTATTTCCAAACCTTAAAgggtttatatttttctatttattctccgcagctttgtgtttttagttCCACCTGGTGGAcaagtacagtgtagtgcaatTGCACGATTTTGTAATTTCTTTATGAATGATCCTTATAAACAAAGCTGAATGTTTGTCTTAGAGCTGTTCTggtcttttttaatttccagtttTGTCTTAATTGTCAGGATTAGCagtaaaatgtacacattgttTAAATCTGATTTTGTCAGTTGTGGAGAAACTACTTTGTAAAGCTGAAGAAGTTCAAAGTGGCGGTATCTATCTCCAACAGAGTTTGCAGAAAAGTGAAGCTGCGTACATTTGCAGAATCCAGTGACAATGAGAGAGAGCTCCTTTTGGGAGAATGCCTGAATTAGTTGCAGCTTGTGGTGGTGAAACATCACACAGAATTTTCACATGGGAGATTCACTTTACAAAGCATTCAACTGTAGCTGTAGTTATCATCAGCGTGTAATGCACAGTCACAAAGTGGAAATGTTACTGAGAAGCCACCTCTGTGTAGTCCAATGACATCTCCGAGGAAGGATAGACATAAACTTAATACAAACACACGAAGGCTGTTGAAAATTAATAATGTGGGGTATGATTCTGAAACATTGCGGCATGTCTGTGTCAGTCACTGTGGCAGGCAGGGATTTCCTGAATCTTctttttgtgcatttgtgatttgtgcccccttctgttttccattcttGGTAATGCAGtatcccctccctccctccctccctcccatgGCCctgcgcagactgtactgtcccTGCACCGGCAGAGTGATTCCCATATCCCTTCTCAAGTGAAGTCCACTCTCACCCACTCTGATGGGTTCTGAAATGAGCGGCGTTTGGGCTGTTCCTGTCCTCAGTGTGCGTCGCAGAGTTTCCAACAGCCCTGGCTGCTGCGTCTCTGGACCTGCAGGCATCTCAGAAGTAGTGGGAAGGGGGCAGCTATAGGTCACAGCGTTCCGCATCAGCCTAGTGCCAAACGTACAGTACTGCTATTCTTGACGGGTCCAGATTAGACCGTGCATGGATTGGGGTGAAGTGTAAGAGAAGCAGTCTtggaattaaataattgttGTGATTCAGTTACATTTGTCTGTGATGGTATTTTGGCGGAGAGAGTGCTCTTGTTCCCTGCCTTAAATCGTGTCAAGTGTGCATTCGAGCGTCAGAGATCTGAGGTCGAACACTATGCTGGCTGTGTATATGAAAGCCATGCAGATTTAGAAATCCAAAAGCTATGTTCATTGCATGAATGGAACTTAAACCTCTATTAGGATTTAATGCAGTTCAGCCCTTGTATACAATTTTGAAGGCTTTTTCCACAACTTTAGCATTCAGTGCCTAAAAATGCatggaaatgcaaaatgttataAAGCATGTTGCCTTTGTCAGCAGTTCTATTGGCATAGCTGGTAAACCGTAAGTGGCATTAATTACACGTGCAGTTACACGTAAACTCTTTACAGGGTTTAATGATAGCATTGTAATTATAGCCACTTAATGGTAGTaccatataaatacaaattatttattctttttttttccaatttctgTTGCAGAGGTGATTATTATATTCACTAGATGTATTATTTAAGATACCGTATGTATTAACTTGCTATGGCTGGTGACCATAAGTACATCTCAAATATTAacttagttattttttgtttgtttcttttgttttaaatataatctcaTTGTTTCAACTTATATTATGAAAGAGACATatcattgtttttcctttgcgTTTTTGTGCTATCTAATGGTATATAAAGGTTTCTGTCCTGGCAACCCAAAGCCCAGAATGATTCTTTCAATACCTGTAGGAGGTTCCAGCGCCAATCACGTCAGTGTTGCAAGGGATGATGGGATTCGATTCTCTGCTCCAAATAACTGCCTGACGCATTGACGTTCTGCCTGCGCGAGCTGGGTTTGATGTAATTCCGTGGGCTAATATGAAGAAAATTTTAAATAACTACCTATTTGTCTTCCTCCTGAAACCatattttcattgaaattgagaaaaatatgaattagaaAACTGTATAAGTTTGCTTTACACTACTTTACTTTACACTAACCATGCCCTATTGTCAGCTTCACAATGGCCAATAGGCGGgctgcaaataaatgaatacactgtCCCTTTAGAATCTGTCCACACCTGGCAATGAGCTTCAGGAAGACGGAGAGTTTTCCCATCATGCCTTCAGTGCATGTTCAGTACACTGTTGTGGGGTGAGGGAGTCTAATTTACTTCAAATCTCCCACCTGTTCAACTAATGCAGGGGAAAACTGGCCCCCACTATCCATAGCTGAGTGAAAGACTGAGGAAATGGACAGCTGTAGTGTCCCAGGCTTGGATGACTTTGCTTTGGTGTTGTACTGTGGCTGTACTGAGGCTGCCAATCTAATGAGGAAGTGTATTAACGGCAAGTTTTGAGTTTCAAAGGAAGACTTTCGTtttgttggctttttttttgtcattttctttttacctcGGTGATCAACACATTACAGTCCACTCCCAGACTTCATGGTTGAGGATGAGACTTCTGTTGTAAATTGAGAATTCACTGTAACACAATATTACCGCTTTACTGTGCAGATTTTTTCCTAAGAGCCCATGTCCTGTATTGACTGCAGGCTTACATCTATATTCTAAGAAAATAtcctatgttaaaaaaaaaaaaaagaaagttatatATGCGCATGCATGAGGCTGTGAAGTCGTATATTTAGAATAACAAATGGcagtgccttttcttttgtactCATACATCTAcccaaaatgtaaatgattttatatggactttaaaaataaatgaaagaaaaaacaaaacaaaaaaaaaaaaaacagaagaaagcaAACGCAGCGATGATGACGATGATCTAAGGAAGAGGAAAATCGCAGGAGATGTGCGAAGCCCATCTGAGCGATGTgatgacattttaaaccatgttGTTCTCAAATGTTTCATCCAGCCAGGCGACAGTGGAGCACTTCCTGCAGCTGAGCGGTGGGCTGTCCGCTCATCCCATTACTCTGTAGGTACTTCTAATGCTGATATGAAGTTATAAATATACCtgtctgtaaaacaaacagatgtaTATATGCGTGTGGAGCATtgtgtgtatgcgtgtctgtgttctctgtatatatgtgtacacaAAGTGTCATGGGATACACATTGCATGGCGTACATCAGCTAGTTAATAAAGATGCTGGCGGGCACTGTGACGTCTAATTCAAGGGAATGAATACCACCCTTCATTAGGAGCGCTTTTATTGACAGTCTGTTCAGACGGCAGCCAGCTTTCAGCTCCCCCAGCAGAGTTTACGGTCCTGCTGTAAAACACTTGCATCACGTAGTGCagtcctccctccctcccctcatcAACGTCGATTACTTTCCACTTCTAGCGTGACTGCATGTTGTATGTATCtgtgaactgtgtgtgtgtgtatggatgtTTATGTTGTGGATGagcagctgtgtttgtgtgttgtacGGTCTGTTTCGAGTGCCTGACATTTATGTGAAaaccacagacaaaaaaaa

Function

symbol description
samd4a Predicted to enable mRNA binding activity and translation repressor activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within negative regulation of translation and regulation of mRNA stability. Predicted to be active in P-body. Orthologous to human SAMD4A (sterile alpha motif domain containing 4A).

NR:

description
PREDICTED: protein Smaug homolog 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000255 True 7623 mRNA 0.47 12 8924397 8945589

Neighbor

gene id symbol gene type direction distance location
AMCG00000256 NA coding upstream 18001 8902907 ~ 8906396 (+)
AMCG00000252 gjd2,gjd2b coding upstream 337042 8585904 ~ 8587355 (+)
AMCG00000244 NA coding upstream 354727 8567467 ~ 8569670 (+)
AMCG00000246 NA coding upstream 373538 8527438 ~ 8550859 (+)
AMCG00000250 NA coding upstream 399173 8519864 ~ 8525224 (+)
AMCG00000258 gnpnat1 coding downstream 51543 8997132 ~ 9004514 (+)
AMCG00000259 NA coding downstream 73073 9018662 ~ 9024727 (+)
AMCG00000266 NA coding downstream 90036 9035625 ~ 9079959 (+)
AMCG00000271 NA coding downstream 175476 9121065 ~ 9156942 (+)
AMCG00000273 trim9,LOC102776798 coding downstream 385947 9331536 ~ 9355148 (+)
G149059 NA non-coding upstream 250611 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 339430 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 340390 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 968008 7955972 ~ 7956389 (+)
G148961 NA non-coding upstream 1164800 7759369 ~ 7759597 (+)
G149172 psmc6 non-coding downstream 67782 9013371 ~ 9016151 (+)
G149253 NA non-coding downstream 334474 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 774358 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 1012124 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 1027459 9973048 ~ 9975172 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 339124 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 349273 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1561690 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1599946 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1627432 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 494472 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 569233 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 615968 9561557 ~ 9591088 (+)
G149424 NA other downstream 1023735 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1589001 10534590 ~ 10535137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000311_01934218_01977325 SAMD4A coding CI01000311 null 1934218 ~ 1977325 (+)