XLOC_006813 (trim9)


Basic Information

Item Value
gene id XLOC_006813
gene name trim9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36868365 ~ 36911118 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013113
GCGCGAAGGAGACGCGTCCGCACAGAGCCGCTGCTGTCGCCGGGGATATTCCGTGTTTGTTTATAGGAAGTCTCCGATTCCAGTTTGAAAGACAAAATGGATGAAATGGAAGAGGAGTTAAAATGCCCGGTGTGCGGCTCATTTTTCCGCGAGCCGATCATCCTGCCCTGCTCGCATAATATTTGCCTGGCCTGCGCGAGAAACATCCTGGTACAGACGCCCGACGCCGAATCCCCGCAAAGCAGCCGCGCGTCCGGCTCCGGGGTCTCCGATTATGATTACTTAGACCTGGATAAGATGAGTCTGTACAGCGAGGCGGACAGCGGATACGGCTCTTACGGCGGGTTCGTGAGCGCACCGACCACCCCTTGCCAGAAGTCCCCCAACGGCGTGCGTGTTTTCCCtccttcaatgcctcctccacaGCAGGCGCAACACCACCTGCTGCCTCACACCGGCGTCCTGCCGCCAGTCCCACGGAACTCCTGCCTCACCTGCCCGCAGTGCCACCGCAGCCTGACGCTGGATGACAGGGGGCTCCGGGGGTTCCCCAAGAACCGCGTTTTGGAGGGGGTGGTGGACCGGTATCAGCAGAGCAAAGCCGCCGCGCTCAAGTGTCAACTGTGCGAAAAGAGCCCCCGCGAGGCGACTGTCATGTGCGAGCAGTGCGACGTGTTTTATTGCGACCCCTGCCGCCTCCGGTGCCACCCTCCCCGAGGCCCGTTGGCCAAGCACCGGCTCGTGCCGCCGGCGCAAGGCAGAATCAGCCGCCGCGCGAGCCCGCGGAAAATCTCCACCTGCACCGAGCACGAGCTGGAAAACCTGAGTATGTACTGTGTCCAATGTAAGACCCCCGTGTGCTACCAGTGTCTGGAGGACGGCAAACACTCCACCCATGAGGTCAAAGCGCTGGGAGCCATGTGGAAGCTCCACAAGGGACAACTCTCTCAAGCACTGAATGTTCTGTCTGATCGGGCCACAGAGGCTAAAGAGTTCCTGGTGCAGCTCAGAAATATGGTCCAACACATACAGGAGAACGGAGTTGAATTTGAGGCGTGTTTGGTGGCCCAGTGTGATGCTCTGATTGAAGCTCTGAACCGCAGGAAAGCACAGCTTCTCAGCAGAGTAACCAAAGAACATGAACACAAACTCTCGgtGGTTCGTGATCAGATCTCGCACTGCACGGTGAAGTTGAGGCAGACCACAGGACTAATGGAGTACTGTCTGGAGGTTATCAAAGAGAACGATCCCAGCGGCTTCCTGCAGATCTCGGATGCTCTGATCAGACGGGTCCATATGACGGAGAATCAGTGGGGGAAAGGCTCTCTGACCCCCCGCATGAGCAGTGACTTTGACCTGACGCTGGACAGCGGGCCTCTGCTGCAGACCATACACCAGCTAGACTTTGTGCAGATGAAGGttccaGCTGCTCCTATTCTTCAGTTAGAGGAGTGCTGCACTCAAACCAGCAGCGCCACTCTGTCCTGGAAACAGCCGCCCCTCTCCACCATCGCTGTGGACGGGTATATTCTAGAGCTGGATGATGGCACTGGAGGCCAGTTCAGAGAAGTGTACGTTGGGACTGAGATGATCTGCACTGTGGACGGTCTGCACTTCAACAGTACTTACAAATCTCGTGTTAAAGCATTTAACTCCAGCGGAGTCGGCCAGTACAGCAAAACGCTTGTCATGCAGACGTCAGAGATAGCCTGGTTCACCTTTGACTCCGCATCGGCTCATCCTGACATCATCTTGTCCAATGACAACCTCACGGTGACGTGTAACAGCTACGACGACCGCGTGGTCATGGGAAACACTGGCTTTTCTCGTGGCGTGCATTACTGGGAGATGACCATCGATCGCTATGATAACCACCCTGACCCAGCGTTTGGCGTCGCCCGGGCCGATGTGATGAAGGATGTGATGCTGGGCAAGGATGATAAAGCATGGGCCATAACTGATGGAGGGATAAGTAAAGGAGCTACGGTGGGTGTTTTGCTGGATTTCACCCGTGGGATTCTCTTGTTTTTGATAAATGATGAGCAACAGGGACCCGTTGCCTTCAATACACTGGAGGGCATGTACTACCCAGCCATCAGCCTCAACCGCAATGTTCAGgtgaCTCTTCATTCTGGGCTGCCTATTCCTGATTTTTATACACCCGGCGAGTCTGAAGCTGCAGGCTCAGTCTGCTAAAAGATTCCTCTCGACTGATACACATTcattcccaaacacacacacgcacgcgcgcacacactcaGAGTGCACATGTATTCAGCTGTGAGGATTTGATGGGGGAATTGCTGCTGACAGTCATTAATACGAGGTTTGAGGAGTGTGAAATGTAAATGGACCCGATAAATGTGAGAGTCAGGGTTAAGGAAACCCTAACATAACCCCAACCCAAACCCTGATGTATGTGAGGTACATTATTATCGAATCATTTTCCTCTCTCTTTCTTACTCTTTTTCTagatatgattattattattgatgttgtcgTTGTTTTTATGGAAAAGGTGCTCATGGACGTGAACTCCCAGCTTACTGGATCTTAACAGAAGTGTGTCTGTTGTTTCATGATAAAATCCTCAGTGTGAAGTTAAGCTTAGAAATAAGTTACTGATGTGTTAGAGCTTAGAGGATGCATTTTACATCACATAGAAATGTTCTGTTTCATATAAAGTTGATTTTTATCTGCAGATGGGGATGGGAGATATCTACAACCTACTCATGAGTCTTAGTCCTTTGTTAATGACCAATCCAATCCCTAAATCCTAAACTTTTAACATATTACACCTCAGTAAATGTGAGATATTTGTATCGGTCTCTCCAAATTCACAGTGGATGAGCAAACATACAATTGGGACAAtgaactgaatgtgtgtcaatgAGGATGTAATGGCTTTCTGTTTGTTGAACAGAATAAAAAACACTAATtgggacacaaacacacacacacacacacacacaggcattttCACAGCCTTGCGTAATGTATTATGGAGAGATGACAATgaataaacttttgtttttctATCTCTCGGTTTTATTTCTCATTCGCTGCCTCAAATCTACACAAGCTAAACGCAAATGCTAAACCAATAACTGGTGCTGCTTATGTTTAATGTGagaaaacaaattgcaatataAAACAGTAGAACTGCAAATATAAAAGAGAGAACCTTAAACGAGACAGTGTAGCTGCTTGAAGCATTTGGCTATTAGTTTACCATAAAGGATGTAATTTTTTCattgaaacaaatatttaaaatcccACTGGTGGGGTTCAGATGTGGGGCAGGTGCTGTACTTTACCTGTTTGTTTGAGCTGATTTTGGCTTAACAAACTACTGAATGTTTGGGTGCAGTGAAGGATAATTTCACCcattgtaaattgtattttttcataaattaatCCCAATATAAgagatgtattattattattattattattgtgtctgAATTGTTGTTATGTGTAAAGTTCTATGCTCAATAAACTTGATTAGGTGCAATA

Function

symbol description
trim9 Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in head. Orthologous to human TRIM9 (tripartite motif containing 9).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8043 Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in head. Orthologous to human TRIM9 (tripartite motif containing 9).

Ensembl:

ensembl_id ENSDARG00000039123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013113 True 3516 mRNA 0.49 10 36868365 36911118

Neighbor

gene id symbol gene type direction distance location
XLOC_006812 pygl coding downstream 5326 36846789 ~ 36863039 (-)
XLOC_006811 nin coding downstream 23420 36800334 ~ 36844945 (-)
XLOC_006810 sav1 coding downstream 70161 36787077 ~ 36798204 (-)
XLOC_006809 map4k5 coding downstream 106911 36705595 ~ 36761454 (-)
XLOC_006808 cdkl1 coding downstream 165201 36693152 ~ 36703164 (-)
XLOC_006814 NA coding upstream 84515 36995633 ~ 36997760 (-)
XLOC_006815 NA coding upstream 98694 37009812 ~ 37012236 (-)
XLOC_006816 syne2b coding upstream 164204 37075322 ~ 37127970 (-)
XLOC_006817 NA coding upstream 199094 37110212 ~ 37110536 (-)
XLOC_006818 si:dkeyp-77c8.1 coding upstream 260858 37171976 ~ 37180815 (-)
XLOC_006471 BX537274.2 misc downstream 26603460 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36042140 825904 ~ 826225 (-)
XLOC_006804 BX927407.1 non-coding downstream 256206 36587770 ~ 36612159 (-)
XLOC_006797 CR361558.1 non-coding downstream 468990 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 905899 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 942881 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 1275988 35592242 ~ 35592377 (-)
XLOC_006819 AL845493.1 non-coding upstream 267484 37178602 ~ 37178716 (-)
XLOC_006829 NA non-coding upstream 617043 37528161 ~ 37535785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_04939174_04962741 TRIM9 coding CI01000012 null 4938146 ~ 4962741 (+)
bowfin (Amia calva) AMCG00000273 trim9,LOC102776798 coding CM030141.1 CM030141.1 9331536 ~ 9355148 (+)