Fish Transcriptome and Expression Database

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model fish

XLOC_006819 (AL845493.1)

Basic Information

Item	Value
gene id	XLOC_006819
gene name	AL845493.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	37178602 ~ 37178716 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013121
GCTGGCTGCTAGCTCTTtgtaactctcacatggtcgcacactgaagctaagcagggttgcactgggtcaatacctggatgggagaccacatgggaaagctaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113463

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013121	True	115	rRNA	0.53	1	37178602	37178716

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006816	syne2b	coding	downstream	50632	37075322 ~ 37127970 (-)
XLOC_006817	NA	coding	downstream	68066	37110212 ~ 37110536 (-)
XLOC_006815	NA	coding	downstream	166366	37009812 ~ 37012236 (-)
XLOC_006814	NA	coding	downstream	180842	36995633 ~ 36997760 (-)
XLOC_006813	trim9	coding	downstream	267484	36868365 ~ 36911118 (-)
XLOC_006820	si:dkeyp-77c8.2	coding	upstream	7587	37186303 ~ 37189560 (-)
XLOC_006821	si:dkeyp-77c8.3	coding	upstream	20582	37199298 ~ 37200120 (-)
XLOC_006822	si:dkeyp-77c8.4	coding	upstream	29744	37208460 ~ 37210369 (-)
XLOC_006823	si:dkeyp-77c8.5	coding	upstream	48334	37227050 ~ 37229245 (-)
XLOC_006824	syne2b	coding	upstream	70282	37248998 ~ 37254777 (-)
XLOC_006471	BX537274.2	misc	downstream	26913697	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	36352377	825904 ~ 826225 (-)
XLOC_006804	BX927407.1	non-coding	downstream	566443	36587770 ~ 36612159 (-)
XLOC_006797	CR361558.1	non-coding	downstream	779227	36399260 ~ 36399375 (-)
XLOC_006829	NA	non-coding	upstream	349445	37528161 ~ 37535785 (-)
XLOC_006836	NA	non-coding	upstream	453910	37632626 ~ 37636598 (-)
XLOC_006842	NA	non-coding	upstream	1011805	38190521 ~ 38195214 (-)
XLOC_006843	NA	non-coding	upstream	1434509	38613225 ~ 38619719 (-)
XLOC_006846	BX323574.1	non-coding	upstream	1674421	38853137 ~ 38853252 (-)

Expression

Co-expression Network