XLOC_006842


Basic Information

Item Value
gene id XLOC_006842
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 38190521 ~ 38195214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013161
atttttttggtgaactatccctttaagagctaAGTAACGCAAGACTACACGGCTGAATTGGATAATTAACTTCTGAAACCTTTTACTGCGCCTTTCTGAAAGAGCGAACTACGAACTTTGCTGATGTTCATTATGAAGCACTGAACAATGCATCATGAATTACGGTAACCAACGTTTTTTGCATCGCGGCTGAAGTCGACATGGCCAGTGGGTTCAAAAACCCAAGGACATGAGGTGAATGGCGGCAGGTGCGGTGGCACTATCCCAGGATCTAGGACAGTAGATTTCCTCCAGCTGGCCGAAAGCCTTTCCCCCAGGCGGCTGCGCAACCAGCTACCTGAACCAAGtgcatggagagaacatgtaaactccacagagaaacattGACCAGTCTGGTAAAGGCTTACCACTGGGTCTCCGTGCTGCCCTATCTAGGAAaaggaaggaggagtaggggtggaagaagggattcttcaagacgaagataactgaggtaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013161 True 497 lncRNA 0.47 2 38190521 38195214

Neighbor

gene id symbol gene type direction distance location
XLOC_006841 CT027676.1 coding downstream 101894 38084077 ~ 38088627 (-)
XLOC_006840 eys coding downstream 150650 37992158 ~ 38039871 (-)
XLOC_006839 si:dkey-188i13.11 coding downstream 533831 37650673 ~ 37656690 (-)
XLOC_006838 si:dkey-188i13.10 coding downstream 540926 37645572 ~ 37649595 (-)
XLOC_006837 si:dkey-188i13.9 coding downstream 547620 37638758 ~ 37642901 (-)
XLOC_006843 NA coding upstream 418011 38613225 ~ 38619719 (-)
XLOC_006844 lmbrd1 coding upstream 426303 38621517 ~ 38792061 (-)
XLOC_006845 BX323574.2 coding upstream 602831 38798045 ~ 38870801 (-)
XLOC_006846 BX323574.1 coding upstream 657923 38853137 ~ 38853252 (-)
XLOC_006847 col9a1b coding upstream 924246 39119460 ~ 39160018 (-)
XLOC_006471 BX537274.2 misc downstream 27925616 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 37364296 825904 ~ 826225 (-)
XLOC_006836 NA non-coding downstream 553923 37632626 ~ 37636598 (-)
XLOC_006829 NA non-coding downstream 654736 37528161 ~ 37535785 (-)
XLOC_006819 AL845493.1 non-coding downstream 1011805 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 1079985 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 1178285 37009812 ~ 37012236 (-)
XLOC_006848 BX324188.2 non-coding upstream 1047341 39242555 ~ 39242672 (-)
XLOC_006850 NA non-coding upstream 1304378 39499592 ~ 39504493 (-)
XLOC_006859 NA non-coding upstream 2223102 40418316 ~ 40419308 (-)

Expression


Co-expression Network