XLOC_006837 (si:dkey-188i13.9)


Basic Information

Item Value
gene id XLOC_006837
gene name si:dkey-188i13.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37638758 ~ 37642901 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013152
GGCGTTCTCTCTCTGTGGAAAAAGACCTGCTGAGTCATGAAGCCCGgacTGTTCACTGTGCTTGGGGTTGCTGCTGGAGCAGTTGGTACAGCTGTGTTAGCTCCGGTGGCGCTGACCATGGCTGGGTTCACCTCTGCTGGTATAGCAGCAGGTTCACTGGGCGCCAGCATGATGTCTTCAGCAGCCATTGCTAATGGAGGCGGTGTGGCAGCAGGAAGCTTGGTCGCCCTCCTTCAGTCAGCAGGTAAATACAGGTGCTGCTGGACTGTCTGCAGGAGCGACCGCTGCAGTGGCATCAgtgggtggtgcagtgggtgcTGCGTTTGGCGGAGCAGCAGATTTTTTCTCTCGTCCACCTCCAAATAACGATGATACGACTGAAAGGCTCATATCAAAATATATGGCCATAATGTTAACCCTAATAATTGGTCTATTAATGGTCGCAATAATCATTGTTAAAGAAAACTGATGATGGTGGATGTTTGAGAACACTTTGCATTTGTGCACATGTTAATTTTATACACTTGCAATTGTGAGATTTCAATAAATGCACATATAGAGTACAATTTAAAATtgagtaaatatatttaatgacATGCACGATTGCAGAGTGTTGTTGCTTAAGAAAACAAGAAAGTATAATTAAAAGATATTAAaagtgtgttcactgctg
>TCONS_00013153
ATTGGCGTTCTCTCTCTGTGGAAAAAGACCTGCTGAGTCATGAAGCCCGgacTGTTCACTGTGCTTGGGGTTGCTGCTGGAGCAGGTAAACCGATTGGTACAGCTGTGTTAGCTCCGGTGGCGCTGACCATGGCTGGGTTCACCTCTGCTGGTATAGCAGCAGGTTCACTGGGCGCCAGCATGATGTCTTCAGCAGCCATTGCTAATGGAGGCGGTGTGGCAGCAGGAAGCTTGGTCGCCCTCCTTCAGTCAGCAGGTGCTGCTGGACTGTCTGCAGGAGCGACCGCTGCAGTGGCATCAgtgggtggtgcagtgggtgcTGCGTTTGGCGGAGCAGCAGATTTTTTCTCTCGTCCACCTCCAAATAACGATGATACGACTGAAAGGCTCATATCAAAATATATGGCCATAATGTTAACCCTAATAATTGGTCTATTAATGGTCGCAATAATCATTGTTAAAGAAAACTGATGATGGTGGATGTTTGAGAACACTTTGCATTTGTGCACATGTTAATTTTATACACTTGCAATTGTGAGATTTCAATAAATGCACATATAGAGTACAATTTAAAATtgagtaaatatatttaatgacATGCACGATTGCAGAGTGTTGTTGCTTAAGAAAACAAGAAAGTATAATTAAAAGATATTAAaagtgtgttca
>TCONS_00013154
GTTCATTAATTGGCGTTCTCTCTCTGTGGAAAAAGACCTGCTGAGTCATGAAGCCCGgacTGTTCACTGTGCTTGGGGTTGCTGCTGGAGCAGTTGGTACAGCTGTGTTAGCTCCGGTGGCGCTGACCATGGCTGGGTTCACCTCTGCTGGTATAGCAGCAGGTTCACTGGGCGCCAGCATGATGTCTTCAGCAGCCATTGCTAATGGAGGCGGTGTGGCAGCAGGAAGCTTGGTCGCCCTCCTTCAGTCAGCAGGTGCTGCTGGACTGTCTGCAGGAGCGACCGCTGCAGTGGCATCAgtgggtggtgcagtgggtgcTGCGTTTGGCGGAGCAGCAGATTTTTTCTCTCGTCCACCTCCAAATAACGATGATACGACTGAAAGGCTCATATCAAAATATATGGCCATAATGTTAACCCTAATAATTGGTCTATTAATGGTCGCAATAATCATTGTTAAAGAAAACTGATGATGGTGGATGTTTGAGAACACTTTGCATTTGTGCACATGTTAATTTTATACACTTGCAATTGTGAGATTTCAATAAATGCACATATAGAGTACAATTTAAAATtgagtaaatatatttaatgacATGCACGATTGCAGAGTGTTGTTGCTTAAGAAAACAAGAAAGTATAATTAAAAGATATTAAaagtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013152 False 673 mRNA 0.45 4 37638758 37642890
TCONS_00013153 False 669 mRNA 0.45 4 37638764 37642893
TCONS_00013154 True 662 mRNA 0.45 4 37638770 37642901

Neighbor

gene id symbol gene type direction distance location
XLOC_006836 NA coding downstream 2160 37632626 ~ 37636598 (-)
XLOC_006835 ifi46 coding downstream 7666 37623276 ~ 37631092 (-)
XLOC_006834 zgc:152791 coding downstream 18468 37617518 ~ 37620290 (-)
XLOC_006833 si:dkey-188i13.6 coding downstream 23729 37609458 ~ 37615029 (-)
XLOC_006832 ifi45 coding downstream 30317 37605896 ~ 37608441 (-)
XLOC_006838 si:dkey-188i13.10 coding upstream 2671 37645572 ~ 37649595 (-)
XLOC_006839 si:dkey-188i13.11 coding upstream 7772 37650673 ~ 37656690 (-)
XLOC_006840 eys coding upstream 349257 37992158 ~ 38039871 (-)
XLOC_006841 CT027676.1 coding upstream 441176 38084077 ~ 38088627 (-)
XLOC_006842 NA coding upstream 547620 38190521 ~ 38195214 (-)
XLOC_006471 BX537274.2 misc downstream 27373853 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 36812533 825904 ~ 826225 (-)
XLOC_006829 NA non-coding downstream 102973 37528161 ~ 37535785 (-)
XLOC_006819 AL845493.1 non-coding downstream 460042 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 528222 37110212 ~ 37110536 (-)
XLOC_006815 NA non-coding downstream 626522 37009812 ~ 37012236 (-)
XLOC_006843 NA non-coding upstream 970324 38613225 ~ 38619719 (-)
XLOC_006846 BX323574.1 non-coding upstream 1210236 38853137 ~ 38853252 (-)
XLOC_006848 BX324188.2 non-coding upstream 1599654 39242555 ~ 39242672 (-)
XLOC_006850 NA non-coding upstream 1856691 39499592 ~ 39504493 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_04436374_04437448 NA coding CI01000012 null 4435280 ~ 4437599 (+)