XLOC_006850


Basic Information

Item Value
gene id XLOC_006850
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39499592 ~ 39504493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013500
CCACCAaaagttttttctctctcttctgcCACACAAATTGTACACGTTAGCCTACTCCATAAAATGACGCACTGTCGCTATAACAACACTTTCCTCCAGCTGAATTCTGGCCTAGCCTAGCCTACTGTACCAGTAGAGTGTTAAACTATGGAGCAGCAGCAGTCATGTCTGGTTATCATCTCCTCGCCGCTCTGCCTCCTCCGCTCGGAGCGCCAGTGAGGGTGAAGATCCGCGCATTCACACCCTAATCACAAACCCAAACACCGCTCCGCGCTCACAGGCGTTTTACGAGCAGTGTTTGCTTTAAGAAACACTCTCTTTATTGCGCTAGACCACCCGAATCCCAATGTAATGAGAAGCGGAATGCGCAGATCCCCCGAGGTGAGTCCCAGAAGGCTGTCCGACATCAGTCCTCAGCTCCGCCAGCTCAAGTACCTGGTGGTGGATGAATCGATTAAAGAGGACCTGAAGTCATCTCGGTCAGTTGAAGACATAAACAGCGCGTCCATTGAGGAGAGGATCCTAAGAATCACCGGCTATTATGGCTACCAGCCGTGGAACGCCGTTTATAAGAGTAagcaactgattttatttttgctttgctaATGATTTTATTGTTGCACAGTTGTGGAGTG
>TCONS_00013501
TCTGTGCGTGTGAGCAGTGAGCTGCTGTCATTCATGGGGATCATGTATGGAGATGGAGACCGGCTCGGACCCCCCCGGAGGGACTGCATGTGTTACCTGGGACCCCCGACCACCTTGATGCCCATCGGAATGCGCAGATCCCCCGAGGTGAGTCCCAGAAGGCTGTCCGACATCAGTCCTCAGCTCCGCCAGCTCAAGTACCTGGTGGTGGATGAATCGATTAAAGAGGACCTGAAGTCATCTCGGTCAGTTGAAGACATAAACAGCGCGTCCATTGAGGAGAGGATCCTAAGAATCACCGGCTATTATGGCTACCAGCCGTGGAACGCCGTTTATAAGAGTAagcaactgattttatttttgctttgctaATGATTTTATTGTTGCACAGTTGTGGAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013500 False 635 lncRNA 0.49 2 39499592 39500307
TCONS_00013501 True 401 lncRNA 0.52 2 39499592 39504493

Neighbor

gene id symbol gene type direction distance location
XLOC_006849 slc35f3b coding downstream 99625 39346298 ~ 39399967 (-)
XLOC_006848 BX324188.2 coding downstream 256920 39242555 ~ 39242672 (-)
XLOC_006847 col9a1b coding downstream 339574 39119460 ~ 39160018 (-)
XLOC_006845 BX323574.2 coding downstream 628791 38798045 ~ 38870801 (-)
XLOC_006846 BX323574.1 coding downstream 646340 38853137 ~ 38853252 (-)
XLOC_006851 zgc:171482 coding upstream 152117 39656610 ~ 39830999 (-)
XLOC_006852 sfrp5 coding upstream 407058 39911551 ~ 39947335 (-)
XLOC_006853 crtac1b coding upstream 559988 40064481 ~ 40141630 (-)
XLOC_006854 loxl4 coding upstream 677994 40182487 ~ 40238813 (-)
XLOC_006855 zgc:123010 coding upstream 742886 40247379 ~ 40282770 (-)
XLOC_006471 BX537274.2 misc downstream 29234687 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 38673367 825904 ~ 826225 (-)
XLOC_006843 NA non-coding downstream 879873 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 1304378 38190521 ~ 38195214 (-)
XLOC_006836 NA non-coding downstream 1862994 37632626 ~ 37636598 (-)
XLOC_006859 NA non-coding upstream 913823 40418316 ~ 40419308 (-)
XLOC_006863 NA non-coding upstream 1457242 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 1507339 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 1725800 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 2158479 41662972 ~ 41663088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_03198856_03201372 NA coding CI01000012 null 3198856 ~ 3201812 (+)
rainbow trout (Oncorhynchus mykiss) G121168 NA non-coding NC_048566.1 CM023220.2 20428856 ~ 20434379 (-)
tiger barb (Puntius tetrazona) G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 unknown NC_056711.1 CM032080.1 17560296 ~ 17575938 (+)