XLOC_006853 (crtac1b)


Basic Information

Item Value
gene id XLOC_006853
gene name crtac1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40064481 ~ 40141630 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013177
gGTACAGGCCGTTACTCCATCTACATCGCCAACTATGCCAGCGGGACAGTAGGTCCACACGCTCTGATTGAAATGGATGAAAGTTCAAGTGACCCGTCCAAGGGAATTGTCGTGCTGTCCAATGTGGCCGAGCAGGCCGGAGTCAACAAGTTCACAGGGGGACGGGGGGTCGTGGTCGGCCCGATCCTCAGTCAGACCCTGCCCGATATCTTCTGCGACAACGAGTACAGTCCGAACTTCTTGTTTCGCAACAATGGAGACGGGACGTTCACTGATGTGGCGGCGCAAGTGGGAGTGGATGACCCGATGCAGCATGGCCGTGGAGTGGCGTTAGCAGATTTTAACCGGGATGGGAAGACAGACATTGTGTATGGAAATTGGAACGGGCCACATCGTCTGTTTCTGCAGCTCAGCAACAATCGCAAAAAAAGGTTTAAGGATATTGCCACTCAGAAGTTTTCCATGCCATCTCCTGTTCGCACTGTTATCGCAGCCGACTTCGACAATGACAATGAACTGGAGGTTTTCTTCAACAACATCGCCTACAGAGGACCATCAGCCAACAGACTCTTCAGAGTTTCTCGGAGAGAGCATGGAGATCCACAAATTGAGGAGCTGAACGTCGGGGAGGCCGCAGAGCCAGAGGGACGGGGAACCGGAGCGGCTGTGACTGACTTTGATGGAGATGGACTGCTGGATCTTCTGGTCACACATGGCGAAAGTGCagcacaacccatctctgtgtATCGAGTCACTCAGGGCTCATCTAATAAATGGCTTCGTGTAATTCCACGCACACAGTTTGGGGCTTTTGCCCGTGGAGCAAAGGTGATTGTCTACACCAAGCGAAATGGCCCTCACACACGCATTATAGATGGAGGATCAGGATACCTGTGCGAGATGGAGCCAGTAGCTCACTTTGGATTTGGGAAAGATGTGGCCACCAGTGTAGAAGTCTTCTGGCCAGATGGACGCTCTGTGGCCAGGCCTCTGGAACCCAGTGATATGAACAAAGTGATGGAGATCCATTACCCAGAGAATGAGGAAGAGGCAACCCCAGCGCTGGAGATCGAGTGTGGGCCAGGGTTTGAGCTCAATGAAAATGGCCGTTGCACTGACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTGTAGAAGTCCACGGTCCTGATGGATCAGCGCCAGGGTGGGTGTTTCCACAGCAGTGAAACATGAAGGCAGCAGGCACAGGAGATCTATGAGCACTACCATATACACAGCAGAACTGAGAACTGAGCTGAGGACAAACTGGAGAAGCTCAAAGGTGAGAAAAGTAATGGCATTAAATGATGAGTAGACAGCTAATAGGGTCATAAGTCGAATTTACCTTCATTTTTTGAGAGAAAAGAACTCAAAACATTCCTGTAGTCCAAAATGAATTATTATGAAACGTTTTGAcaacagaaaacatattttttgccTACATTGAAAGAATAGTAAAATCAGTGTTTCGATAATCAGCAGTCCGGTCACTTCTAAAAGGCAGTTACTCGGCTGGTCCACAATAATTTAGTTCATTCTTGTATTGATTGATTAATGCAGTTTGTGAATAGGTGGTTAATGAAGGATTGGGCAGTTGAACACTTACAAGACAGTCAATCCACAGCTTTTAGAAAAGTGCTGTTGCTGATTGACATGCAAACTTAAAGAGACAGCAGTACAGCCCATCAGAAATGTTAGGGTTTCCATTAATGTGTGGTTGGTTAAGCTTGGACAATATTTGGCCGAGATGAAACTATTTGAACATCTGGAGTTTGAGGGTTCAAAAATACTAagaaatttgtctttaaaattTGCAAGTTTCAATTCTTATCCATGCAAATCACTAAccaattttaaattttatatattttatatatttttatataaggaaatactgtaaataaaatgccTTTATGGAACATGAACTTCAC
>TCONS_00013178
ATGTTGGCGTGGATGTTACTGCTCACTGTGCGTGTGTCAGGACTGTCCTGGGGCCAACGGACTGAACCCATGTTTACCTCAGTAACTCAGAGTGTTTTCCCTCCTGACTATGAGAACAATCCAACGCAGCTCAACTATGGTGTTGCTGTCACTGATGTGGATGGAGACGGGGATCTGGAGATGTTTGTGTCAGGCTACAATGGGCCAAATCTGGTGTTGAAGTATGACAAGTTTAAGAAGAGGCTTGTCAACATTGCTGTCGACAATCGCAGTTCTCCATATTACGCTCTCAGAGACCGACAGGGCAATGCCATTGGAGTGACAGCATGTGACATAGATGGTGACGGCAGGGAGGAAATTTACGTCCTCAACACTAATAATGCCTTTTCAGGGAGAGCGACATACACTGACAAGCTCTTTAAGTTTCGTAATGGCCGGTATGAGGATTTGCTGAATGATGACGTAAATGAACACAGAGATGTTGCCAATCGTGTGGCTGGCCGCTCTGTTGCATGCGTGGACAGAAAGgGTACAGGCCGTTACTCCATCTACATCGCCAACTATGCCAGCGGGACAGTAGGTCCACACGCTCTGATTGAAATGGATGAAAGTTCAAGTGACCCGTCCAAGGGAATTGTCGTGCTGTCCAATGTGGCCGAGCAGGCCGGAGTCAACAAGTTCACAGGGGGACGGGGGGTCGTGGTCGGCCCGATCCTCAGTCAGACCCTGCCCGATATCTTCTGCGACAACGAGTACAGTCCGAACTTCTTGTTTCGCAACAATGGAGACGGGACGTTCACTGATGTGGCGGCGCAAGTGGGAGTGGATGACCCGATGCAGCATGGCCGTGGAGTGGCGTTAGCAGATTTTAACCGGGATGGGAAGACAGACATTGTGTATGGAAATTGGAACGGGCCACATCGTCTGTTTCTGCAGCTCAGCAACAATCGCAAAAAAAGGTTTAAGGATATTGCCACTCAGAAGTTTTCCATGCCATCTCCTGTTCGCACTGTTATCGCAGCCGACTTCGACAATGACAATGAACTGGAGGTTTTCTTCAACAACATCGCCTACAGAGGACCATCAGCCAACAGACTCTTCAGAGTTTCTCGGAGAGAGCATGGAGATCCACAAATTGAGGAGCTGAACGTCGGGGAGGCCGCAGAGCCAGAGGGACGGGGAACCGGAGCGGCTGTGACTGACTTTGATGGAGATGGACTGCTGGATCTTCTGGTCACACATGGCGAAAGTGCagcacaacccatctctgtgtATCGAGTCACTCAGGGCTCATCTAATAAATGGCTTCGTGTAATTCCACGCACACAGTTTGGGGCTTTTGCCCGTGGAGCAAAGGTGATTGTCTACACCAAGCGAAATGGCCCTCACACACGCATTATAGATGGAGGATCAGGATACCTGTGCGAGATGGAGCCAGTAGCTCACTTTGGATTTGGGAAAGATGTGGCCACCAGTGTAGAAGTCTTCTGGCCAGATGGACGCTCTGTGGCCAGGCCTCTGGAACCCAGTGATATGAACAAAGTGATGGAGATCCATTACCCAGAGAATGAGGAAGAGGCAACCCCAGCGCTGGAGATCGAGTGTGGGCCAGGGTTTGAGCTCAATGAAAATGGCCGTTGCACTGACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTaattaccatactgctcattctgaccgttctcatataaaacgccatactgtcacaacatatttacattcaaagctattattgagatattaa
>TCONS_00013179
ATGTTGGCGTGGATGTTACTGCTCACTGTGCGTGTGTCAGGACTGTCCTGGGGCCAACGGACTGAACCCATGTTTACCTCAGTAACTCAGAGTGTTTTCCCTCCTGACTATGAGAACAATCCAACGCAGCTCAACTATGGTGTTGCTGTCACTGATGTGGATGGAGACGGGGATCTGGAGATGTTTGTGTCAGGCTACAATGGGCCAAATCTGGTGTTGAAGTATGACAAGTTTAAGAAGAGGCTTGTCAACATTGCTGTCGACAATCGCAGTTCTCCATATTACGCTCTCAGAGACCGACAGGGCAATGCCATTGGAGTGACAGCATGTGACATAGATGGTGACGGCAGGGAGGAAATTTACGTCCTCAACACTAATAATGCCTTTTCAGGGAGAGCGACATACACTGACAAGCTCTTTAAGTTTCGTAATGGCCGGTATGAGGATTTGCTGAATGATGACGTAAATGAACACAGAGATGTTGCCAATCGTGTGGCTGGCCGCTCTGTTGCATGCGTGGACAGAAAGgGTACAGGCCGTTACTCCATCTACATCGCCAACTATGCCAGCGGGACAGTAGGTCCACACGCTCTGATTGAAATGGATGAAAGTTCAAGTGACCCGTCCAAGGGAATTGTCGTGCTGTCCAATGTGGCCGAGCAGGCCGGAGTCAACAAGTTCACAGGGGGACGGGGGGTCGTGGTCGGCCCGATCCTCAGTCAGACCCTGCCCGATATCTTCTGCGACAACGAGTACAGTCCGAACTTCTTGTTTCGCAACAATGGAGACGGGACGTTCACTGATGTGGCGGCGCAAGTGGGAGTGGATGACCCGATGCAGCATGGCCGTGGAGTGGCGTTAGCAGATTTTAACCGGGATGGGAAGACAGACATTGTGTATGGAAATTGGAACGGGCCACATCGTCTGTTTCTGCAGCTCAGCAACAATCGCAAAAAAAGGTTTAAGGATATTGCCACTCAGAAGTTTTCCATGCCATCTCCTGTTCGCACTGTTATCGCAGCCGACTTCGACAATGACAATGAACTGGAGGTTTTCTTCAACAACATCGCCTACAGAGGACCATCAGCCAACAGACTCTTCAGAGTTTCTCGGAGAGAGCATGGAGATCCACAAATTGAGGAGCTGAACGTCGGGGAGGCCGCAGAGCCAGAGGGACGGGGAACCGGAGCGGCTGTGACTGACTTTGATGGAGATGGACTGCTGGATCTTCTGGTCACACATGGCGAAAGTGCagcacaacccatctctgtgtATCGAGTCACTCAGGGCTCATCTAATAAATGGCTTCGTGTAATTCCACGCACACAGTTTGGGGCTTTTGCCCGTGGAGCAAAGGTGATTGTCTACACCAAGCGAAATGGCCCTCACACACGCATTATAGATGGAGGATCAGGATACCTGTGCGAGATGGAGCCAGTAGCTCACTTTGGATTTGGGAAAGATGTGGCCACCAGTGTAGAAGTCTTCTGGCCAGATGGACGCTCTGTGGCCAGGCCTCTGGAACCCAGTGATATGAACAAAGTGATGGAGATCCATTACCCAGAGAATGAGGAAGAGGCAACCCCAGCGCTGGAGATCGAGTGTGGGCCAGGGTTTGAGCTCAATGAAAATGGCCGTTGCACTGACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTGTAGGTGAGTTGAGACTGAAttttccaccaaggcaacccggggtgctgaaatatgattggctaaactggcattgggcaggttaa
>TCONS_00013180
ATGTTGGCGTGGATGTTACTGCTCACTGTGCGTGTGTCAGGACTGTCCTGGGGCCAACGGACTGAACCCATGTTTACCTCAGTAACTCAGAGTGTTTTCCCTCCTGACTATGAGAACAATCCAACGCAGCTCAACTATGGTGTTGCTGTCACTGATGTGGATGGAGACGGGGATCTGGAGATGTTTGTGTCAGGCTACAATGGGCCAAATCTGGTGTTGAAGTATGACAAGTTTAAGAAGAGGCTTGTCAACATTGCTGTCGACAATCGCAGTTCTCCATATTACGCTCTCAGAGACCGACAGGGCAATGCCATTGGAGTGACAGCATGTGACATAGATGGTGACGGCAGGGAGGAAATTTACGTCCTCAACACTAATAATGCCTTTTCAGGGAGAGCGACATACACTGACAAGCTCTTTAAGTTTCGTAATGGCCGGTATGAGGATTTGCTGAATGATGACGTAAATGAACACAGAGATGTTGCCAATCGTGTGGCTGGCCGCTCTGTTGCATGCGTGGACAGAAAGgGTACAGGCCGTTACTCCATCTACATCGCCAACTATGCCAGCGGGACAGTAGGTCCACACGCTCTGATTGAAATGGATGAAAGTTCAAGTGACCCGTCCAAGGGAATTGTCGTGCTGTCCAATGTGGCCGAGCAGGCCGGAGTCAACAAGTTCACAGGGGGACGGGGGGTCGTGGTCGGCCCGATCCTCAGTCAGACCCTGCCCGATATCTTCTGCGACAACGAGTACAGTCCGAACTTCTTGTTTCGCAACAATGGAGACGGGACGTTCACTGATGTGGCGGCGCAAGTGGGAGTGGATGACCCGATGCAGCATGGCCGTGGAGTGGCGTTAGCAGATTTTAACCGGGATGGGAAGACAGACATTGTGTATGGAAATTGGAACGGGCCACATCGTCTGTTTCTGCAGCTCAGCAACAATCGCAAAAAAAGGTTTAAGGATATTGCCACTCAGAAGTTTTCCATGCCATCTCCTGTTCGCACTGTTATCGCAGCCGACTTCGACAATGACAATGAACTGGAGGTTTTCTTCAACAACATCGCCTACAGAGGACCATCAGCCAACAGACTCTTCAGAGTTTCTCGGAGAGAGCATGGAGATCCACAAATTGAGGAGCTGAACGTCGGGGAGGCCGCAGAGCCAGAGGGACGGGGAACCGGAGCGGCTGTGACTGACTTTGATGGAGATGGACTGCTGGATCTTCTGGTCACACATGGCGAAAGTGCagcacaacccatctctgtgtATCGAGTCACTCAGGGCTCATCTAATAAATGGCTTCGTGTAATTCCACGCACACAGTTTGGGGCTTTTGCCCGTGGAGCAAAGGTGATTGTCTACACCAAGCGAAATGGCCCTCACACACGCATTATAGATGGAGGATCAGGATACCTGTGCGAGATGGAGCCAGTAGCTCACTTTGGATTTGGGAAAGATGTGGCCACCAGTGTAGAAGTCTTCTGGCCAGATGGACGCTCTGTGGCCAGGCCTCTGGAACCCAGTGATATGAACAAAGTGATGGAGATCCATTACCCAGAGAATGAGGAAGAGGCAACCCCAGCGCTGGAGATCGAGTGTGGGCCAGGGTTTGAGCTCAATGAAAATGGCCGTTGCACTGACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTGTAGGTGAGTTGAGACTGAAGTCAGGACATAAGGGTGGATTGATACAAGAAGACACCCCTGGGAAATGCTGTTTTCTCACATTTCACATGAGTAGAGTTTGA

Function

symbol description
crtac1b Predicted to enable calcium ion binding activity. Predicted to be involved in axonal fasciculation. Orthologous to human CRTAC1 (cartilage acidic protein 1).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-28 Predicted to enable calcium ion binding activity. Predicted to be involved in axonal fasciculation. Orthologous to human CRTAC1 (cartilage acidic protein 1).

Ensembl:

ensembl_id ENSDARG00000102517

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013177 False 2058 mRNA 0.46 11 40064481 40120252
TCONS_00013178 False 1875 mRNA 0.51 14 40092268 40141630
TCONS_00013179 False 1869 mRNA 0.51 14 40093084 40141630
TCONS_00013180 True 1887 mRNA 0.51 13 40094279 40141630

Neighbor

gene id symbol gene type direction distance location
XLOC_006852 sfrp5 coding downstream 117146 39911551 ~ 39947335 (-)
XLOC_006851 zgc:171482 coding downstream 233482 39656610 ~ 39830999 (-)
XLOC_006850 NA coding downstream 559988 39499592 ~ 39504493 (-)
XLOC_006849 slc35f3b coding downstream 664514 39346298 ~ 39399967 (-)
XLOC_006848 BX324188.2 coding downstream 821809 39242555 ~ 39242672 (-)
XLOC_006854 loxl4 coding upstream 40857 40182487 ~ 40238813 (-)
XLOC_006855 zgc:123010 coding upstream 105749 40247379 ~ 40282770 (-)
XLOC_006856 pyroxd2 coding upstream 143242 40284872 ~ 40316367 (-)
XLOC_006857 nkx3.3 coding upstream 255887 40397517 ~ 40401870 (-)
XLOC_006858 nkx2.3 coding upstream 267585 40409215 ~ 40411917 (-)
XLOC_006471 BX537274.2 misc downstream 29799576 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39238256 825904 ~ 826225 (-)
XLOC_006846 BX323574.1 non-coding downstream 1211229 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1444762 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 1869267 38190521 ~ 38195214 (-)
XLOC_006859 NA non-coding upstream 276686 40418316 ~ 40419308 (-)
XLOC_006863 NA non-coding upstream 820105 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 870202 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 1088663 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1521342 41662972 ~ 41663088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_02762547_02790618 CRTAC1B, CRTAC1 coding CI01000012 null 2762182 ~ 2791303 (+)