XLOC_006856 (pyroxd2)


Basic Information

Item Value
gene id XLOC_006856
gene name pyroxd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40284872 ~ 40316367 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013184
GTGCTCAATCGTTGGTTTGAATCAGAGCCGTTGATAGCTACATTAGCCACTGACTCTGTGATCGGAGCAAACACGAGCCCAAATAATCCAGGAAGTGGGTATGTCCTGCTGCACCATGTCATGGGTGAGCTGGAGAAAGAAAAAGGCTCCTGGGGTTACGTGGAGGGAGGAATGGGTGGAGTGCCTCAATCCATCGCCCGCTCCGCCCGCTCTCTTGGAGCAGATATTTTCACAAACACAGATGTCGAACAAGTCCTTATTGGTCCGGATGGTTCTGCTAAGGGTGTAGTGTTGACAGATGGAACTGAAGTCCATAGTAAAGTGGTTTTGTCCAACGCAACTCCTCATGTCACCTTCAAACGTCTCACACCGCAGGATGCCCTGCCAGAGGCTTTCATCACAGCTGTAGATCAAATTGACTACACCTCTCCTGTTACCAAGATAAACGTGGCTGTAGACAAGCTGCCAGATTTCTTGGCTGCTCCGAATGGCGCGGATGGAAAAGCGGGTCCTCATCATCAGTGTTCAATCCACCTGAACTGTGAGAGCGTGGAGGTGCTGGAAGACGCTTATTGGGAGGGTCAGCATGGTCGGCCATCCTCCAGgcCCATGATAGAAATGACCATTCCCTCAGTGCTGGATCCCACTCTAGCGCCGCCTGGATGTCACGTGGTGTCACTTTTTATACAGTTTACACCATATTTGCTTGAGGGTCGCCGTGCTTGGACTGATGAGGATAAGGAGAGGTTTGGGGACACAGTATTCGACTGGGTTGAGCGTTACGCACCAGGATTTAAAGCCTCAATAGTAGGCAAAGACATCCTGACCCCTGCTGATCTGGAGAGGGTCTTTGGTCTCACCGGAGGGAATATTTTCCATGGCTCAATGTCGTTGGATCAGCTTTACCTGGCGAGGCCTTTGCCCTCTATCGCAGACTATCGCTCGCCCGTCAAAGGATTGTACTTATGTGGCAGTGGCAGCCATCCAGGTGGAGGTGTTATGGGTGCAGCCGGCTGGAGTTCAGCTCTCAGAGTTTTGGCAGATTTCAAGAGACTGTAATCCTGGATTTCCATAAGGAAAATTTTACTTGCCGATTGAGTATTTTTAATTGGAAAAGAGATGAGGAGAGACATTTCACgcaaaaatgaaacttctgtcatcatttaatctgCCTCGACTTGCTTCTAACCAGTAtgagttttttttgtttctgtcgAACAAAGAGGAAGATATTTGGAAGGAGGGCTGTGCgatatgaaaaaaaatcttatatcaCGATATAAGTCTTCTCACATTCTTCTATGACTTGAgtaatttttctcagaaattgtaatttactaagtagttttaaaagtgtaagtaagtaatgtggatttatatagcgcatttattgtgtatggccatacacctaaagtgcttcacaatcatgagagagggtctctccacaccacaacaagtgtgcaacatccacttggatgatgcgatggcagccacaggacaacagcgccagtgcgctcaccacacaccagcttttggtggagtggagagacagtgatacagccaattcggtgtatggggatgattggaaggccatgatcgtaagggccgatggagggaatttggccctGACACCAGGGgttactctttacgagaagtgccagtgagtacttttactttcacatactgtagtacatttttagtgctataTCGACACTTTTATACCcttactttccttcaacctgcagtcaatactttattatttcctgtctatggggattagaaaaatcagcccTGTGATTCTTGTCCATTCAAATCGctcatagaaagtaaatcgcaccACACTGAACTACCTTAAACATGCAGCAAAaccatttggaagcattaaaaagtgTCCAAGAGGATACTTTACATGCATTGATCCAAAGACTGTTTAAATgcaatgtcactgatgagaagatgacgggtGTTTACTGTGTGATGATCAAAATGACCTTTGACAATCACTAAATGTACTACAGAATactacgtttacacacacacgcacaagttACATGTAAACATTTCAACTTCAGCGTAATAGTCACCACTcctaagtacttttaaaaggtctactttttactcctactttgagtaatatttacaacagatacttttactctacttgcactcacagcaagaaggtcgctgattcgagcctcggctggatcagttggcatttctgtgtggagttcacatgttcttcctgtgttcgcgtggttttcctccgggtgctccggtttcctccacagtccaaaaacatgtgggataggtgaattggtttagctaaattgtccgtagtgtatgagtgtgaataagagtgtatgggtgtttcccagtgatgggttacagctggaagggcttctgctggctaaaacatatgctggataagttaacggttcattctgctgtggcgatcccagattaataaagggactaagccgaaaataaaagtgaatgaatatatatatacagtattgagCACATAGAGTTAAAGTATATACTCTGAAATGTACTCATTCATATGCGATCTTGTTTGCCACTTTATTTAGAACTTGagggcaaatgtttgattaaaaatgtagaattataaaatgaatattagtaaaatataaaaaactaacgATTACAGGGCCACTTAATAATccaaaatattgtataataaaataagaacgtaaacattgtactttcaaGATTGCAACTTTTTCCTgatgctgttattcatgtttctgcATCCTCTCAATGGCATGTAATATTTTGCTTgtataaattatgaaaatgtttaaccctaaacaatgtattttgtgacacTACATCTCTGTTTCGTTTATTATGAGTATATGAAAAAATAGCCATTTTCTTTTTGTCTATTTATCATTCTtgtatatttatctatttttaaaaatttcagaAATCTCTTACCTCAAATGTTAGAAACAAGTAactattgatttccatagtaggaaaaacaaatagaaagtcagtggttaccggtttttcacattcttcaaaattatcttcttttcagaacaacaacatcaacaaaactgaggttgagtaaatgatgacagaattcaattttgagtgaactaaccctttaagtgtTGTATGTGATTGACTTTGGAACACTCCCAACAATGTTACCCTAAAATGggtttttgtgaatttttaagtaaataaaatgaagtCAGTTTTGATTAA
>TCONS_00013185
GGCGGTGAGGGAGGAGTTACGGAGTTTGAGCTCTGGGTTTGAGGGCCACCCGGACTCGTCATGGCTGTGTCAGTCAGAGCAGGTCGCGCGCACAGAGCCTTTATTTCAGTCACACAGCGATGCAGCCACAGCAGCACTGCCCTCAAACCTCAGTATGACGCAGTTATTATCGGTGCAGGTCACAATGGCCTCATTGCTTCAGCATATCTGCAGAAGGGAGGCCTGAGAACAGCAGTGCTGGAGCGCAGACATGTGCTTGGGGGAGCAGCTGTGTCTGAAGAGATCATTCCAGGGTTTCACTTCTCCAGGGCCTCCTATCTGCTTAGTTTATTACGTCCACACATCTACCAGGACCTGGAGCTTAAGAAACATGGCCTGAAGGTTTACATGAGGGACCCCTATTCATTTACCCCCATGCTGGAGGATGGTGTAGGAGGGCGACCACCGCGGTCTTTACTGCTCGGATCTGACCTGACAAATACGCGGCAAGAGATTGGCAAATTCTCTGAGAAAGACGCCAAGGTGTATCCTGATTTTTTACGCTATTTGGAAACACTGGCCTGCGCCATCCACCCACTGTTAGACGCTCCACCCGTTGACATTCCAGGTCTGACTCAGGGCTCTTTGACAAAGAGATTATCTGCCCTGAGGAGCTTGAAACCTTTGGTGAAGTCTGggttgAAGCTGGGGAAGAATATACCAGATTTCTATGAACTTGTTACAGCTCCAGCTATGAAGGTGCTCAATCGTTGGTTTGAATCAGAGCCGTTGATAGCTACATTAGCCACTGACTCTGTGATCGGAGCAAACACGAGCCCAAATAATCCAGGAAGTGGGTATGTCCTGCTGCACCATGTCATGGGTGAGCTGGAGAAAGAAAAAGGCTCCTGGGGTTACGTGGAGGGAGGAATGGGTGGAGTGCCTCAATCCATCGCCCGCTCCGCCCGCTCTCTTGGAGCAGATATTTTCACAAACACAGATGTCGAACAAGTCCTTATTGGTCCGGATGGTTCTGCTAAGGGTGTAGTGTTGACAGATGGAACTGAAGTCCATAGTAAAGTGGTTTTGTCCAACGCAACTCCTCATGTCACCTTCAAACGTCTCACACCGCAGGATGCCCTGCCAGAGGCTTTCATCACAGCTGTAGATCAAATTGACTACACCTCTCCTGTTACCAAGATAAACGTGGCTGTAGACAAGCTGCCAGATTTCTTGGCTGCTCCGAATGGCGCGGATGGAAAAGCGGGTCCTCATCATCAGTGTTCAATCCACCTGAACTGTGAGAGCGTGGAGGTGCTGGAAGACGCTTATTGGGAGGGTCAGCATGGTCGGCCATCCTCCAGgcCCATGATAGAAATGACCATTCCCTCAGTGCTGGATCCCACTCTAGCGCCGCCTGGATGTCACGTGGTGTCACTTTTTATACAGTTTACACCATATTTGCTTGAGGGTCGCCGTGCTTGGACTGATGAGGATAAGGAGAGGTTTGGGGACACAGTATTCGACTGGGTTGAGCGTTACGCACCAGGATTTAAAGCCTCAATAGTAGGCAAAGACATCCTGACCCCTGCTGATCTGGAGAGGGTCTTTGGTCTCACCGGAGGGAATATTTTCCATGGCTCAATGTCGTTGGATCAGCTTTACCTGGCGAGGCCTTTGCCCTCTATCGCAGACTATCGCTCGCCCGTCAAAGGATTGTACTTATGTGGCAGTGGCAGCCATCCAGGTGGAGGTGTTATGGGTGCAGCCGGCTGGAGTTCAGCTCTCAGAGTTTTGGCAGATTTCAAGAGACTGTAATCCTGGATTTCCATAAGGAAAATTTTACTTGCCGATTGAGTATTTTTAATTGGAAAAGAGATGAGGAGAGACATTTCACgcaaaaatgaaacttctgtcatcatttaatctgCCTCGACTTGCTTCTAACCAGTAtgagttttttttgtttctgtcgAACAAAGAGGAAGATATTTGGAAGGAGGGCTGTGCgatatgaaaaaaaatcttatatcaCGATATAAGTCTTCTCACATTCTTCTATGACTTGAgtaatttttctcagaaattgtaatttactaagtagttttaaaagtgtaagtaagtaatgtggatttatatagcgcatttattgtgtatggccatacacctaaagtgcttcacaatcatgagagagggtctctccacaccacaacaagtgtgcaacatccacttggatgatgcgatggcagccacaggacaacagcgccagtgcg
>TCONS_00013186
GAAAAGCGGGTCCTCATCATCAGTGTTCAATCCACCTGAACTGTGAGAGCGTGGAGGTGCTGGAAGACGCTTATTGGGAGGGTCAGCATGGTCGGCCATCCTCCAGgcCCATGATAGAAATGACCATTCCCTCAGTGCTGGATCCCACTCTAGCGCCGCCTGGATGTCACGTGGTGTCACTTTTTATACAGTTTACACCATATTTGCTTGAGGGTCGCCGTGCTTGGACTGATGAGGATAAGGAGAGGTTTGGGGACACAGGTATCTTATTTGCAGTTTTGTGTGCTGTTtgcaaattaaaatgaaacttaaaatg

Function

symbol description
pyroxd2 Predicted to enable oxidoreductase activity. Orthologous to human PYROXD2 (pyridine nucleotide-disulphide oxidoreductase domain 2).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-147 Predicted to enable oxidoreductase activity. Orthologous to human PYROXD2 (pyridine nucleotide-disulphide oxidoreductase domain 2).

Ensembl:

ensembl_id ENSDARG00000014101

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013184 False 3237 mRNA 0.41 9 40284872 40302710
TCONS_00013185 False 2252 mRNA 0.49 16 40286595 40316367
TCONS_00013186 True 316 lncRNA 0.48 2 40293418 40293968

Neighbor

gene id symbol gene type direction distance location
XLOC_006855 zgc:123010 coding downstream 2102 40247379 ~ 40282770 (-)
XLOC_006854 loxl4 coding downstream 46059 40182487 ~ 40238813 (-)
XLOC_006853 crtac1b coding downstream 143242 40064481 ~ 40141630 (-)
XLOC_006852 sfrp5 coding downstream 337537 39911551 ~ 39947335 (-)
XLOC_006851 zgc:171482 coding downstream 453873 39656610 ~ 39830999 (-)
XLOC_006857 nkx3.3 coding upstream 81150 40397517 ~ 40401870 (-)
XLOC_006858 nkx2.3 coding upstream 92848 40409215 ~ 40411917 (-)
XLOC_006859 NA coding upstream 101949 40418316 ~ 40419308 (-)
XLOC_006860 CNNM1 coding upstream 145999 40462366 ~ 40499296 (-)
XLOC_006861 st3gal7 coding upstream 399952 40716319 ~ 40726865 (-)
XLOC_006471 BX537274.2 misc downstream 30019967 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39458647 825904 ~ 826225 (-)
XLOC_006850 NA non-coding downstream 780379 39499592 ~ 39504493 (-)
XLOC_006848 BX324188.2 non-coding downstream 1042200 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1431620 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1665153 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 2089658 38190521 ~ 38195214 (-)
XLOC_006863 NA non-coding upstream 645368 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 695465 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 913926 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1346605 41662972 ~ 41663088 (-)

Expression


Co-expression Network