XLOC_006861 (st3gal7)


Basic Information

Item Value
gene id XLOC_006861
gene name st3gal7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40716319 ~ 40726865 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013192
ACTCACAACACCACAGCGGATGAAAGACAGAAGCAGAGCTCAAATTCAGCACAACGCCGACATGCTTCATCTCCACAGctgagagaaggaaaaaaaaagaccTGATAGAAGAGTAGGAGTATTTGGGAAGTGATTGGGAAAATGGTGACTCTGAAACACTTGAGTGTTAATGATAATGATGAAGACGGTGTTCCTTTGTTACCGGAAGCCAGCAGCTTGGAGAGTCCAACCACACAACACAGCAGGGCAGAGTCCAGAGATTTCTTTCTCAGCCGGAGGTATAACTTCATTGTGAGCATCGTTCTGCTGTTGAGCCTTTACTCTGCTCTTCTGGTTCCTGCATATCTGCCAACAGCAGAGCCCATCTGGACTAATGAGAGCTCTGCTGAAAATCTGGCTCTGCTGAATCAGTCTGCATCTCTGCTGTCTCAGTCATGTCACAGCGGCTGGAGTGTAGAGAGGATGAGGACTATGTTGTCCACTCCAGCCGGTCTGCTGAAGATCCCTGTGTTCTTGGAGAACGGCACTGGAGATTGGGCTCTGCCTCCTCCGCTGGGTCTGCAAGGCAGTGAAGAGATGGCAGAGCAGGCCCTGAAAGCTCTGCCATTCACCGCTGTGCCAACCGGACCAGAGACCTGTAGGAGATGTGTGGTGGTCGGAAGCGGCGGTATTTTACACGGCAAAAATCTTGGAGCTCATATAGACCAGTACAACATTATCATTAGAGTGAATAATGCTCCAGTGTTTGGATTTGAGAGCGACGCTGGCTCAAGAACTACCATTCGCCTCATTTATCCAGAAGGAGCTCCTTCCCACATACAGGAATACGAGAGAACTGAAGTCGTAGCTTTGGTTGTGTTCAAGAGTTTAGATTTAGCATGGATGACCTCGGTAGTAACCAAAGAGCCTTTGAGCTGGTGGTCTAAACTGTGGTTCTGGAAGGATGTAATAGACTCAATACCTCTACAGCCAGAAAACGTTCGCATCCTGAATCCCGAAATCATGTACAGGACTGGACAGGTGCTGCAAACCTACGCAGAACAGCAGAGAAAGATGGTGCCAACTCTGGGTATAACCGCAGTGGTTGTGGCCCTGCAGGTGTGTGATGAGGTGAGCATAGCTGGATTCGGATACGACCTGCAGCACCCTGGAGCTCCGCTACATTACTACGGCTCTCTCCGCATGGACGCCATGAAGACGCAGGTGGTTCACGATGTTAGTGCCGAGACTGTCTTTCTGAAAGAGCTGGTCAAAGCTGGAGCGGTGCGAGACCTCACTGGGGCACTGTGAGAGACCACTGCAGACACTCCACAACAGCTGAAAGAAGAAATGAAGAGAATGAAAAGCAACAGAAAACACAATAGATTTATAGCATGCTGTTTCGACCATTCTCATGATATGATATACAGCTGAAGTTATTAGTTATTATGATATAcagtaaattattagccccccctgtagatttttccccaaatttctgtttaacagaaagaagattttttttcaacacatttctaaacataatagtttttaataactgatttattttatctttgccatgataacagcctataatattttactagatatttctcaagataCTAGAATTCAGCTGAAAGTGAGATTTTTAAGGTTTAACTAGGTTTATTCCAGTAAGCtaaagtaagggtaattaggcaagtccttgtataacaatggtttgttctgtagacaattgaaaaaaaaatgttttaaaatgtttttaaaaaattttaaactgtttttattgtagctgatagaaaacaaataagacttcctccagaagaaaaaaaaacattattataaatactgtgaaaaattccttgctctgttaaagatcatttgggaaatacttgaaaaaaaaaagaaagaaaaaaaaaaatcacagaagggctcataattttgacttcaactgtattaatataaacaattcaatacctgatatcaaaattaaattattgataTCAAGTATTGCATTTTATCtagaaaaactatttaatatgtaattatttatatctttgtattttcatttaatgTCTCCATCGGCTGCTACTCAAATTTAATTGCTGATTTTAATAATTGAATACTTATTAGTAATTATTCCAATGTTCCAATAGTTCAAAATGTGACTGGACATTGTGAAAACTATTGGGTAAATGTTGGGATAAAATACAATACAGACATTACCTAACTTAAATTTAAAATGGGAACATGACAGCTAAATTAAAACCAAAGCTATAATACATAACAtctataaaactaaaataaaacactttttttacttAAGCTTTATAAAAGATGACAAAAAATTGTTCtgaaaattatttcatatttatttatctcGTCAAACACcaatacatattttacatattgtgtaaaaaatgttttagattcTGTATTTATTCAAGCAAAGTATAAATGAGATTTCAGCGTACAGAGAAAAACATTCAGTCATGTAAAAAAACAtcacttttatattttaacacCTAAATCAGAGAGTAAAAAACACTTTCGCTAGATTTCTTTAACTACAATTTTAACTCGGGGAATGTTTTGTTGTATGTGTGTAACAACATTCATGATCAAGAATtacagctacaaaaaaaaaaaaaaaagtgtttcaagAAATGAATTCTGCTATGCGATACATTGGATGTTTTTGGCTGCTGGACAAATAAACTGACACTTTTCTTTTA

Function

symbol description
st3gal7 Enables exo-alpha-sialidase activity and lactosylceramide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in digestive system; eye; heart; integument; and pleuroperitoneal region.

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0004308 exo-alpha-sialidase activity molecular_function
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060322-2 Enables exo-alpha-sialidase activity and lactosylceramide alpha-2,3-sialyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in digestive system; eye; heart; integument; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000039064

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013192 True 2714 mRNA 0.38 7 40716319 40726865

Neighbor

gene id symbol gene type direction distance location
XLOC_006860 CNNM1 coding downstream 217023 40462366 ~ 40499296 (-)
XLOC_006859 NA coding downstream 297011 40418316 ~ 40419308 (-)
XLOC_006858 nkx2.3 coding downstream 304402 40409215 ~ 40411917 (-)
XLOC_006857 nkx3.3 coding downstream 314449 40397517 ~ 40401870 (-)
XLOC_006856 pyroxd2 coding downstream 399952 40284872 ~ 40316367 (-)
XLOC_006862 morn4 coding upstream 19416 40746281 ~ 40754499 (-)
XLOC_006863 NA coding upstream 234870 40961735 ~ 40977410 (-)
XLOC_006864 NA coding upstream 284967 41011832 ~ 41114062 (-)
XLOC_006865 si:dkeyp-86d6.2 coding upstream 397729 41124594 ~ 41546779 (-)
XLOC_006866 BX548002.1 coding upstream 503428 41230293 ~ 41230409 (-)
XLOC_006471 BX537274.2 misc downstream 30451414 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39890094 825904 ~ 826225 (-)
XLOC_006850 NA non-coding downstream 1211826 39499592 ~ 39504493 (-)
XLOC_006848 BX324188.2 non-coding downstream 1473647 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1863067 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 2096600 38613225 ~ 38619719 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 936107 41662972 ~ 41663088 (-)
XLOC_006868 CT583720.1 non-coding upstream 1118088 41844953 ~ 41845067 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_02389469_02394443 ST3GAL7 coding CI01000012 null 2389343 ~ 2394676 (+)