XLOC_006859


Basic Information

Item Value
gene id XLOC_006859
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40418316 ~ 40419308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013878
CATGCCTGCAGTCTCAGGGGCTGCTCTCAACCctgCGACGGCGAATGAATGGGAACTCATGCTCGAACAGAAACAAATTGTCAGTTTGATGGGAGACGCCACACTGGCTGCTCTGAGTAACACAGTCTCCCCGCTCGCAACATGTTTATCCAGTGGAAGGTCATGTGGTGTGCATCCCCAAACGAACAAcatataaatctgaataaaattaattgtattattgtttgAATGACAATCTTTGTAAACTGTGCGCATACCAGCGGTCAAGATGAACTCGAAGCAACCTTTCCTTTTATTTTTGCCTCTCTCTGGCACGGCCCAGGGAATGTTTAGACAAAAAAAGAGAGGAAATCTAGCCGAAGACGGTGGCTTTTGCTGCGTCTTAATCACCGCTGTCTGTTGTAATCGAATATTTAGGTTACGGTCTTCCTCTCTCAGCACATTATCCGCGGCGGAGGTCACACACATCACGGGCTAAACGCTTGGTAATTTGCGCACatgtatacaaacacacacctgcGGGGTTAAGGCCATGAGGGAAAATACAGCTGTCTAATTTATTGGTCCCAGGAGGCGAAAGGGGGAGCAGCTCGGTGGATTTCTTCCGTCAGACCAGACCTCCCTAACTCAAAGCTCTGCTGTGTGACAGGGAATGTCTGGTGCAGCTCCTTTCCTCCCAGTCTGAGGTCGAAACGGGGAAGGCTATCAGTCATACAGCTCGGTCAGATGCACAATGGTTCCCGACGAGGTCTCAAGGCCTGGCGAAGCACACGGCCTGAAACCAGGAGCTGATAAGCCTCACCTTCCGGGACCTAACAGGATCTGCAGCTCCTCAGATACGCGCTGTGTATATAAATATGGAAGGCCTTCTGGGCCTGCTGAGAACAGTATGAGGAAATTTCCCATGTTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013878 True 911 lncRNA 0.50 2 40418316 40419308

Neighbor

gene id symbol gene type direction distance location
XLOC_006858 nkx2.3 coding downstream 6399 40409215 ~ 40411917 (-)
XLOC_006857 nkx3.3 coding downstream 16446 40397517 ~ 40401870 (-)
XLOC_006856 pyroxd2 coding downstream 101949 40284872 ~ 40316367 (-)
XLOC_006855 zgc:123010 coding downstream 135546 40247379 ~ 40282770 (-)
XLOC_006854 loxl4 coding downstream 179503 40182487 ~ 40238813 (-)
XLOC_006860 CNNM1 coding upstream 43058 40462366 ~ 40499296 (-)
XLOC_006861 st3gal7 coding upstream 297011 40716319 ~ 40726865 (-)
XLOC_006862 morn4 coding upstream 326973 40746281 ~ 40754499 (-)
XLOC_006863 NA coding upstream 542427 40961735 ~ 40977410 (-)
XLOC_006864 NA coding upstream 592524 41011832 ~ 41114062 (-)
XLOC_006471 BX537274.2 misc downstream 30153411 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39592091 825904 ~ 826225 (-)
XLOC_006850 NA non-coding downstream 913823 39499592 ~ 39504493 (-)
XLOC_006848 BX324188.2 non-coding downstream 1175644 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1565064 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1798597 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 2223102 38190521 ~ 38195214 (-)
XLOC_006866 BX548002.1 non-coding upstream 810985 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1243664 41662972 ~ 41663088 (-)
XLOC_006868 CT583720.1 non-coding upstream 1425645 41844953 ~ 41845067 (-)

Expression


Co-expression Network