XLOC_006855 (zgc:123010)


Basic Information

Item Value
gene id XLOC_006855
gene name zgc:123010
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40247379 ~ 40282770 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013183
GGATCTCTGCCGGTTACTGGGGCTCAGCGGCTCCAGTGATGAGAGAACAGAAGAGATGGACACGAATGCCATTCATGAGCAGAATGACGACACGCTTTCACAGGATGTCTTAATTGGTGAAGAGGGTCTCAGCGAAGAGGAGAAGGCCAGGCGGAAAGCAGAAAGGCGCAAAGCCAAGAGGAAGcgtcAACGGCAGCGGAAGAAACTAGAGCGGGTTAAAAAGGACGAAAGTACTGAACAGgaagaggaggaggaggaggaggaggaggaggaagatgatgCAGGCCCTGATTCTGAGCTGGATGAGTCTGAAGAGTCTGAGCTGGAGGAAGTGGTCGTGTCAAAGGTGGAAGAGAAGCCTGTGGCTCTTCTGAATAAAAGTCCTTCTGGACCTCCGTTAGCTTCTGGAAACAAAAGCAACCGGCAGCAGGGGGCCCGTTCTGGTGAGGAGGACCCAGGGTGGGATGTGAATAGTGCTTTTGTTGCGAATGCTGTCAGTCACATTCGACCCAAAGCGAAAAGTAAAGGGAAGTCAAAAGAGAACAAGGAAAATGAGAGCAGGCCCGCAGAAgtCATTGGCTTTTCAGAAGCTAAAACTAAAAGAAGTGCTTCGCTAGTAGAAAAAGGGATTCGATTTGTTCAGGAGGGTCAGTACACGCAAGCTGTCAGTCTGTTTACAGAGGCCATCAAATGTGACCCCAAAGACTACAGGTTTTTTGGGAATCGCTCTTACTGCTACTGTTGTCTGGAGCAGTATGCTCTGGCTCTTGCTGATGCTGAGAAATCTATCCAGATGGCTCCTGATTGGCCCAAAGGATATTACCGTAGGGGAAGTGCACTAATGGGGCTTAAGAGGTACAGTGAAGCTGAGAAAGCCATGGAACAGGTGCTAAAACTGGATGGAGATTGTGAAGAAGCTGTCAATGACCTCTTGTACTGTAAAGTGCAACAACTTACGGAGCTTGGATATGATGAGGAGCAGAGTATTCAGTTGCTGGAAAAATATAATACAGTGCAGGCCGTTGTTGCAGCCAAGGCATCAAATCAGGACTGTGCACTCCTTCAACCTGGTCCTTGCAATTCTCTTTGGGTGGGCAACGTGACCACAGAACTGACTGAGAAACATCTGCGGGACCTCTTTAAAATTTACGGAGAAATTGACAGCATTCGGGTCCTGCATGAACGTTTCTGTGCGTTTGTTAACTTTAAGAATGCCAACATGGCCTCCCGTGCAATGGAGAAACTCAATGGACATTTTATTGAGAATACTCGACTAGTGGTTCGATATCCAGACCGACGGATTCAAAGAGTTCTGCCAACACCTGCTATGCAACAACCTGCTGGAGCTACTGGACCAAGACGCAGAGGTCCTGTCAACGGAGATGAGTGTTACTTCTGGAGGACCACCGGCTGTCATTTTGGAGATAGGTGTCGCTATAAGCACATTCCCGATCACAGAGGCAAAGACTGGCAACCTTGAATCAACACTAGCCTTACTTTCTCCCCCTAGGAACTCGACCGCATGACTGTAGGGGACTGTAATCTTCACTTTGATTAGCTGTAGGTCAGGACCAGTATTGTGGATCAGAGTCTTGAGGTCAGAgatccccccccacccccctcctCGAGTGAATTCACTGTCAGACTCTGAACCTCATGGGGATTCAAAGCAGACGGCTCCCTGGGAAAAAGTGTCTTTTGAGGTGGGGTTTGGGTGGTGCAGAGTGCCAGAGCATCGCTGTACCGCATGGCCGTCTGCTGAGGTTTAACACGGCCTCTCATATCCAATgctctcttcttttttcctgtgCCAACACCACCAATCCAACCAATCCAAAGAAGAGTTGCAGAGCTTGTCTGACATTTGAGTTAATCTCGAGAGAAGAGAATGactctcaatatatatatatttttttgcgtGTGAGGTTGCAGAGTTTGGAGAGGATCGTACCAAAGAATAATCCAGTGCCATACGCTGAGAAACAAAAACTGAGCGTATTTGTAAATGCAAGTGTGTTTTAGAATTCCACCACCTCAAACACACTCCAGCTGTTCATTCAAGTTTACAGTCATTTGTAATTGGACTAAAGATGTATTCTCTCGCAGATTTAAGGCATGTCAGTATTGTGAAGGGTCAGAGCAATGTTTGAATTTCGCAAAATCATTTTCAGTTCTCCtttctttcccttttttcttTGCAGTCTTGCACTTTACCGTGTTGGATGGGGAGCTTGGGCATTTAAAGTTGGCGACAGGTTGTTCCTCCAGCATAAGGTGGAtgtagatttattttaattttccaaGAGTAGAGGTTTGGTCAGAATAGTTTTGAAAGGTATTGATGATCTGTGGTCATCTGTGATATTTTGTTCATGGTTTTTTCTGATGGCATGCTGTTgccatttaaatttacatttgtctacgacagtgtttctcaaccacggtCCTGGAGGCCCACCCACactgcatattttggatgtctcctttgtttgTCACGCTCATCTTTCAGTATCTGCTAATGAACTGATGCTCTGAAACAGGTATATTTGGTTAAAGAGAcatggaaatgtgcagagctggtggtcctccaggaatgtggttgagagaTTTTGTTATACGACTATGAATATGAACGTGATTAATGGTTTTCCGTTTAAGGGCGAGTTCACGACAAAATGAACATTCTTGTACTCTCATTTTATCTACTCGCGTCATTCCAAACTCATTAGAAATATTttcatctttgaaacacaaatgCTTTTAATCATATCTGAGAGATTTTCATGACCAAATTATCTAAAACTGTTAGAATGAGAttgaaaaaatgaattaatatacaAGGCGTCGGAAGAGTAACGATCGTACATATGATGATCTCGTTGAGTTTAGAATTGTATTCATATTAACGTTAATCACCAATATGATGTCATAAATCTTAGTGGTTCTTGCCTAAGCTGAAAAGTGCCATGTGACACGCAAGATTAAACCTTATTGGTTCTCACTCGTCAAGCAAGCATGATTGAGCAGTTGTAAACATTTACTCACtgattaatgatttatattttgaCTGGAATCTTAAATCAAGACAGAAGACCAAGATTAAACTGCTTAAATTTGATCAAGTAATACATTTAAATCGATGATTttttggatcttttttttttttttttcaaagtgtcaACTTTTTTAGTGAATACACATTTAATGGAAACACAAAAGTCCCccagatttaattaaaaaaaagatttattctatttttgaatgggtttggaacaacatgatgaTGCGTAGATGCCAAAAATaccattttggggtgaactaaccctttaaggcgAAGGCGTCAAATCCAgtagagggccgcagctcttcacagtttagttccaaccctgcttcaacacacttacctgtaggtttttaaacaaaactgaagGGCTCAATTAGCTGctcaggtgtgttcaattagcgttagaactaaactgtgcagagctgcgaccctccaggaactgTCTTTGACCCATGTGCTTTAATGTTTCAGTTATAGACTGAGTCATGCTGCTCCACACAATGCAGAAAATCGTGTGTTTTTCTCTATATCTTACGCAAGAGGTCTGAGACACAGGAAACTCTTGCATTTGGCACTTTTCATGCCGTCAGCACAAATTTGACCGGGTGGTTTTtatcatttccttttttttaacgTTCCTGCTCTGGGTACAGTGGGAGAGAAGGAAGTCGGCTGTTTAAGACTATTGGTCATGTCTTCCTCCTCATGACTCATTTTGTACAACAGCGTGCACATTTTTATCTTGCAATATTCTTTTTTTCAATGCATTTGAAAACTCGTATGACCTCTGATGTTGTGCTGTTCTGACACGCATAACCAAAGAAACACTAATGTTTACCTATAGTGTACCACAAACAAACATGTCTGCTATTTTTGTACATTACACTATTTAGGATGTATCAGTTTATGAGTTTTTACTGTAGATATGACTGCATGGACTTTTATGCAGTTTGTAGTGATTTTAGTTGTATTGGGCTACTTTTGGCTCCATGTGACAGTCCGGAGTGCCTTAAAACATTTGCTTTCCTGACAGATGAGTTATTTTAGCATTAATATTTAAGTCTCGCTCCCATTTAATATTTAAGAAGAATGGGGGACAAAATGCTAAATATTGAACATTGTAGCGTGTGTCCAGAGTAATGTCTGTTTCGTTGGTTTTGGATGGAGGCGTACAGCTGTGGTTCTCATTCTTGTTTTTAGGTTTTAAAAGACACCTGTGTggtcaaataaattattttaatgattttgtttCTTTGAGGAGTCACACAACAGTAGCAGCTCCTCACACTGTTTTGCTGCTCAAAGAGCGCTTAATAgtttaaatgtgcattaaaggACATTTATCACTCG

Function

symbol description
zgc:123010 Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-15 Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).

Ensembl:

ensembl_id ENSDARG00000039082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013183 True 4414 mRNA 0.42 16 40247379 40282770

Neighbor

gene id symbol gene type direction distance location
XLOC_006854 loxl4 coding downstream 8566 40182487 ~ 40238813 (-)
XLOC_006853 crtac1b coding downstream 105749 40064481 ~ 40141630 (-)
XLOC_006852 sfrp5 coding downstream 300044 39911551 ~ 39947335 (-)
XLOC_006851 zgc:171482 coding downstream 416380 39656610 ~ 39830999 (-)
XLOC_006850 NA coding downstream 742886 39499592 ~ 39504493 (-)
XLOC_006856 pyroxd2 coding upstream 2102 40284872 ~ 40316367 (-)
XLOC_006857 nkx3.3 coding upstream 114747 40397517 ~ 40401870 (-)
XLOC_006858 nkx2.3 coding upstream 126445 40409215 ~ 40411917 (-)
XLOC_006859 NA coding upstream 135546 40418316 ~ 40419308 (-)
XLOC_006860 CNNM1 coding upstream 179596 40462366 ~ 40499296 (-)
XLOC_006471 BX537274.2 misc downstream 29982474 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39421154 825904 ~ 826225 (-)
XLOC_006848 BX324188.2 non-coding downstream 1004707 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1394127 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1627660 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 2052165 38190521 ~ 38195214 (-)
XLOC_006863 NA non-coding upstream 678965 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 729062 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 947523 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1380202 41662972 ~ 41663088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_02663225_02675005 NA coding CI01000012 null 2663225 ~ 2675246 (+)